RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 TEX33O43247 280 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 HOXC11O43248 304 aaPredicted RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 PAPSS1O43252 624 aaPredicted RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 LSM8O95777 96 aaKnown RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 CCDC172P0C7W6 258 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 NCAM1P13591 858 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 CORO1AP31146 461 aaKnown RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 OPRD1P41143 372 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 CCR3P51677 355 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 TRIP4Q15650 581 aaPredicted RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 ANO4Q32M45 955 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 EFHC1Q5JVL4 640 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 NOP9Q86U38 636 aaKnown RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 ZDHHC17Q8IUH5 632 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 EPS8L1Q8TE68 723 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 DDX1Q92499 740 aaKnown RBP13.04□□□□□ -0.32
SLIRP-209ENST00000557342 SERPINB11Q96P15 392 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 PNKPQ96T60 521 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 POPDC2Q9HBU9 364 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 ASNSD1Q9NWL6 643 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 WDR35Q9P2L0 1181 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 SFMBT1Q9UHJ3 866 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 FBXO4Q9UKT5 387 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 FANCMQ8IYD8 2048 aa13.04□□□□□ -0.32
SLIRP-209ENST00000557342 H0Y858 1186 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 ATG13O75143 517 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 LATS1O95835 1130 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 EGFP01133 1207 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 KLKB1P03952 638 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 APODP05090 189 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 ZNF445P59923 1031 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 YWHAZP63104 245 aaKnown RBP13.03□□□□□ -0.32
SLIRP-209ENST00000557342 CDR2Q01850 454 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 RING1Q06587 406 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 MTAPQ13126 283 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 NNTQ13423 1086 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 GAB4Q2WGN9 574 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 TAF3Q5VWG9 929 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 NUGGCQ68CJ6 796 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 OR6B2Q6IFH4 312 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 TRIM72Q6ZMU5 477 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 TOGARAM2Q6ZUX3 1019 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 NUDT18Q6ZVK8 323 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 ERICH1Q86X53 443 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 TMEM25Q86YD3 366 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 DENND1CQ8IV53 801 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 UNC45BQ8IWX7 931 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 CPXM2Q8N436 756 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 SPEM1Q8N4L4 309 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 ATOH1Q92858 354 aaPredicted RBP13.03□□□□□ -0.32
SLIRP-209ENST00000557342 XPO6Q96QU8 1125 aaKnown RBP13.03□□□□□ -0.32
SLIRP-209ENST00000557342 BBS2Q9BXC9 721 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 RBM12Q9NTZ6 932 aaKnown RBP13.03□□□□□ -0.32
SLIRP-209ENST00000557342 MARK1Q9P0L2 795 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 AGO1Q9UL18 857 aaKnown RBP13.03□□□□□ -0.32
SLIRP-209ENST00000557342 MYO6Q9UM54 1294 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 CACNA1IQ9P0X4 2223 aa13.03□□□□□ -0.32
SLIRP-209ENST00000557342 HSF2BPO75031 334 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 CYBBP04839 570 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FYNP06241 537 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 MMEP08473 750 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FERP16591 822 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 GABRB2P47870 512 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 CXCL12P48061 93 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 TBX4P57082 545 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FANCCQ00597 558 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 SLC6A3Q01959 620 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 NHLH1Q02575 133 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 NR1I3Q14994 352 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 ZNF528Q3MIS6 628 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 PTPN20Q4JDL3 420 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 LRSAM1Q6UWE0 723 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 TPGS1Q6ZTW0 290 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FAM183BPQ6ZVS7 135 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 DQX1Q8TE96 717 aaKnown RBP13.02□□□□□ -0.33
SLIRP-209ENST00000557342 C18orf8Q96DM3 657 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FAM122AQ96E09 287 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 NAP1L5Q96NT1 182 aaPredicted RBP13.02□□□□□ -0.33
SLIRP-209ENST00000557342 TSPY26PQ9H489 355 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 FBRSL1Q9HCM7 1045 aaKnown RBP13.02□□□□□ -0.33
SLIRP-209ENST00000557342 PRMT8Q9NR22 394 aaPredicted RBP13.02□□□□□ -0.33
SLIRP-209ENST00000557342 DEC1Q9P2X7 70 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 TJP2Q9UDY2 1190 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 NOCTQ9UK39 431 aaKnown RBP13.02□□□□□ -0.33
SLIRP-209ENST00000557342 NAALADL1Q9UQQ1 740 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 TLR6Q9Y2C9 796 aa13.02□□□□□ -0.33
SLIRP-209ENST00000557342 A0A0A0MRY4 1105 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 CHURC1-FNTBB4DL54 471 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 NEDD8-MDP1E9PL57 170 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 MSI1O43347 362 aaKnown RBP13.01□□□□□ -0.33
SLIRP-209ENST00000557342 CACNG3O60359 315 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 KAT7O95251 611 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 IGLV3-27P01718 113 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 ERBB2P04626 1255 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 SP9P0CG40 484 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 TYRP14679 529 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 GBP1P32455 592 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 SCNN1AP37088 669 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 GRIA2P42262 883 aa13.01□□□□□ -0.33
SLIRP-209ENST00000557342 SLC6A11P48066 632 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms