RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 MAGEE1Q9HCI5 957 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 FARSBQ9NSD9 589 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 UCKL1Q9NWZ5 548 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 RIMS3Q9UJD0 308 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 COL4A3BPQ9Y5P4 624 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 OR5K3A6NET4 321 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 EVPLLA8MZ36 301 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 CLDN25C9JDP6 229 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 H0YJX3 145 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 INO80B-WBP1J3KQ70 363 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ERBB2P04626 1255 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 TMEM253P0C7T8 217 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 AOC1P19801 751 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 RRM2P31350 389 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 STAT3P40763 770 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 RCAN1P53805 252 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 MAPRE1Q15691 268 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 DUSP7Q16829 419 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 IGSF11Q5DX21 431 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 FAM47CQ5HY64 1035 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SEL1L2Q5TEA6 688 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 PXDC1Q5TGL8 231 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 FOXR2Q6PJQ5 311 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 PIK3AP1Q6ZUJ8 805 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 IFNL2Q8IZJ0 200 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 GUF1Q8N442 669 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 FANCBQ8NB91 859 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SLC4A11Q8NBS3 891 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 SIMC1Q8NDZ2 872 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 VPS33AQ96AX1 596 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 CCDC124Q96CT7 223 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 TARS2Q9BW92 718 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 WWP1Q9H0M0 922 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 NOL6Q9H6R4 1146 aaKnown RBP14.25□□□□□ -0.13
SHMT2-226ENST00000556825 NANOGQ9H9S0 305 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 PRDM11Q9NQV5 511 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ZSWIM5Q9P217 1185 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 AP3M1Q9Y2T2 418 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 COMMD10Q9Y6G5 202 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 MAU2Q9Y6X3 613 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 ZHX2Q9Y6X8 837 aa14.25□□□□□ -0.13
SHMT2-226ENST00000556825 FAM170AA1A519 330 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 ARHGEF37A1IGU5 675 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 RNF103O00237 685 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 SPAG6O75602 509 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 EGFRP00533 1210 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 HOXB1P14653 301 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-226ENST00000556825 PHKG2P15735 406 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 IDUAP35475 653 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 CCNG2Q16589 344 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 HSF5Q4G112 596 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-226ENST00000556825 UGT3A1Q6NUS8 523 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 HERC6Q8IVU3 1022 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 SIX6OS1Q8N1H7 587 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 PROM2Q8N271 834 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 FBXW8Q8N3Y1 598 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 OR10Z1Q8NGY1 313 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 LRRC15Q8TF66 581 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 OMA1Q96E52 524 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 SNX18Q96RF0 628 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 TSG101Q99816 390 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 CNNM2Q9H8M5 875 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 PTBP2Q9UKA9 531 aaKnown RBP14.24□□□□□ -0.13
SHMT2-226ENST00000556825 SORCS3Q9UPU3 1222 aa14.24□□□□□ -0.13
SHMT2-226ENST00000556825 TEX51A0A1B0GUA7 166 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PP2D1A8MPX8 630 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 MCF2P10911 925 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 ZNF182P17025 639 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 EVI2BP34910 448 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 OTUD4Q01804 1114 aaKnown RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 IRF5Q13568 498 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SIX1Q15475 284 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 NPY5RQ15761 445 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 CLVS2Q5SYC1 327 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PLEKHG7Q6ZR37 379 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SYDE1Q6ZW31 735 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 CHSY1Q86X52 802 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 CCDC33Q8N5R6 958 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 TTLQ8NG68 377 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 EPS8L1Q8TE68 723 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SLC39A13Q96H72 371 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PWWP2AQ96N64 755 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 NPLQ9BXD5 320 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 DNAJC18Q9H819 358 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 MEGF6O75095 1541 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 ASTN2O75129 1339 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SMCO2A6NFE2 343 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PCP4L1A6NKN8 68 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SLC9A3R1O14745 358 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 BCL10O95999 233 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PTPN9P43378 593 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 AP2S1P53680 142 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-226ENST00000556825 CACNB3P54284 484 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 AMPD3Q01432 767 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 DNASE1L3Q13609 305 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 SNX17Q15036 470 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 PDIA6Q15084 440 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 KRT80Q6KB66 452 aa14.23□□□□□ -0.13
SHMT2-226ENST00000556825 UNC5AQ6ZN44 842 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms