RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 RMND1Q9NWS8 449 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 RAXQ9Y2V3 346 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 PCDHA5Q9Y5H7 936 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 MYO18AQ92614 2054 aaKnown RBP12.48□□□□□ -0.41
SRP54-203ENST00000553544 KIAA1549LQ6ZVL6 1849 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 HELZ2Q9BYK8 2649 aaKnown RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 APC2O95996 2303 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 COCHO43405 550 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 RTN3O95197 1032 aaPredicted RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 NDUFV2P19404 249 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 MAOBP27338 520 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 PSMC2P35998 433 aaKnown RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 CACNA2D1P54289 1103 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 PPP3CAQ08209 521 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 IFRD2Q12894 506 aaPredicted RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 GRAMD4Q6IC98 578 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 PAQR9Q6ZVX9 377 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 MIB1Q86YT6 1006 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 ZC3H3Q8IXZ2 948 aaKnown RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 FAM186BQ8IYM0 893 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 XPO6Q96QU8 1125 aaKnown RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 DUSP9Q99956 384 aaKnown RBP12.47□□□□□ -0.41
SRP54-203ENST00000553544 B3GNT5Q9BYG0 378 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 ELOVL4Q9GZR5 314 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 WDR35Q9P2L0 1181 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 PCOLCE2Q9UKZ9 415 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 HCN2Q9UL51 889 aa12.47□□□□□ -0.41
SRP54-203ENST00000553544 A0A1B0GTW7 788 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 CBFA2T3O75081 653 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 HLA-DRAP01903 254 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 TRIM49P0CI25 452 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 TRIM49CP0CI26 452 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 KRT13P13646 458 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 ASPAP45381 313 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 SNX30Q5VWJ9 437 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 EGFLAMQ63HQ2 1017 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 IL27RAQ6UWB1 636 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 TMPRSS7Q7RTY8 843 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 BBS7Q8IWZ6 715 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 CRYBG2Q8N1P7 616 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 TAS1R2Q8TE23 839 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 ERCC4Q92889 916 aaPredicted RBP12.46□□□□□ -0.41
SRP54-203ENST00000553544 FBXO32Q969P5 355 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 BBC3Q96PG8 261 aaPredicted RBP12.46□□□□□ -0.41
SRP54-203ENST00000553544 ACOX2Q99424 681 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 CDC6Q99741 560 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 ZNF518BQ9C0D4 1074 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 NACA2Q9H009 215 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 DNAJC17Q9NVM6 304 aaKnown RBP12.46□□□□□ -0.41
SRP54-203ENST00000553544 DKK4Q9UBT3 224 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 NFE2L3Q9Y4A8 694 aa12.46□□□□□ -0.41
SRP54-203ENST00000553544 MYOFQ9NZM1 2061 aa12.46□□□□□ -0.42
SRP54-203ENST00000553544 ADAMTS9Q9P2N4 1935 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CELSR3Q9NYQ7 3312 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 GFRA2O00451 464 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CLDN5O00501 218 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 TRIM24O15164 1050 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CETN3O15182 167 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 SMC2O95347 1197 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 ZNF883P0CG24 379 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 P4HA1P13674 534 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CD6P30203 668 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 GTF2H1P32780 548 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 GCLMP48507 274 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 PMS1P54277 932 aaKnown RBP12.45□□□□□ -0.42
SRP54-203ENST00000553544 GRIK2Q13002 908 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 ANKRD40Q6AI12 368 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 SPOPLQ6IQ16 392 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 SCARA5Q6ZMJ2 495 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 METTL3Q86U44 580 aaKnown RBP12.45□□□□□ -0.42
SRP54-203ENST00000553544 UNC93AQ86WB7 457 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 FUKQ8N0W3 1084 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CADM4Q8NFZ8 388 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 DNASE2BQ8WZ79 361 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 SMARCE1Q969G3 411 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 ERLEC1Q96DZ1 483 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 EEF2KMTQ96G04 330 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 TNIP3Q96KP6 325 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 ZFRQ96KR1 1074 aaKnown RBP12.45□□□□□ -0.42
SRP54-203ENST00000553544 MRGPRX1Q96LB2 322 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 GABRG3Q99928 467 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 GTPBP4Q9BZE4 634 aaKnown RBP12.45□□□□□ -0.42
SRP54-203ENST00000553544 APOBEC3GQ9HC16 384 aaKnown RBP12.45□□□□□ -0.42
SRP54-203ENST00000553544 TMEM8AQ9HCN3 771 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 CD248Q9HCU0 757 aa12.45□□□□□ -0.42
SRP54-203ENST00000553544 TNRC6BQ9UPQ9 1833 aaKnown RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 BPTFQ12830 3046 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 TRABD2BA6NFA1 517 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 GADD45BO75293 160 aaPredicted RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 PIK3CAP42336 1068 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 TUBP50607 506 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 NDST1P52848 882 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 FKBP3Q00688 224 aaKnown RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 CYP4F3Q08477 520 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 INCA1Q0VD86 236 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 SUZ12Q15022 739 aaKnown RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 KRT39Q6A163 491 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 KIAA1324Q6UXG2 1013 aaKnown RBP12.44□□□□□ -0.42
SRP54-203ENST00000553544 HTR3DQ70Z44 454 aa12.44□□□□□ -0.42
SRP54-203ENST00000553544 ACOT1Q86TX2 421 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms