RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TSHRP16473 764 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PRKCHP24723 683 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ALDH18A1P54886 795 aaKnown RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 AQP5P55064 265 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 THOC5Q13769 683 aaKnown RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 TMEM132DQ14C87 1099 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC6Q16204 474 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 TEX44Q53QW1 395 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 FAM47CQ5HY64 1035 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SNX30Q5VWJ9 437 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC62Q6P9F0 684 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ATG14Q6ZNE5 492 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 MOB2Q70IA6 237 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PLPPR4Q7Z2D5 763 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 NDUFAF2Q8N183 169 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 FBXO41Q8TF61 875 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 OTUD5Q96G74 571 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF333Q96JL9 665 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SIGLEC10Q96LC7 697 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 FAM161BQ96MY7 647 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SYT15Q9BQS2 421 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CEP41Q9BYV8 373 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 YIPF3Q9GZM5 350 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 DPP3Q9NY33 737 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ZFATQ9P243 1243 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 E2F8A0AVK6 867 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 A6NHS1 94 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 MEI4A8MW99 385 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CAPN14A8MX76 684 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KRT37O76014 449 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 RARBP10826 455 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CYP2F1P24903 491 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SDC4P31431 198 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 PGM1P36871 562 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 OCRLQ01968 901 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 INCA1Q0VD86 236 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 UBAP2LQ14157 1087 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 NOL9Q5SY16 702 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SLC9A4Q6AI14 798 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 LCLAT1Q6UWP7 414 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 NUDCD3Q8IVD9 361 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KBTBD2Q8IY47 623 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 ADGRF2Q8IZF7 708 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 PYROXD2Q8N2H3 581 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 TEX9Q8N6V9 391 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 RBM15BQ8NDT2 890 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CLMNQ96JQ2 1002 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KLC2Q9H0B6 622 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 DPEP3Q9H4B8 488 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 DHX35Q9H5Z1 703 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 NRDE2Q9H7Z3 1164 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 ELP3Q9H9T3 547 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 AKT3Q9Y243 479 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SNX9Q9Y5X1 595 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 E7ENQ6 273 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 I3L4J1 428 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 NVLO15381 856 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 ITM2AO43736 263 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 GAS2O43903 313 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SPAG6O75602 509 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF286BP0CG31 522 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 GCKP35557 465 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KRT72Q14CN4 511 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 GLRA4Q5JXX5 417 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KCNT2Q6UVM3 1135 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 DENND5BQ6ZUT9 1274 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 MAP7D3Q8IWC1 876 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SLC25A41Q8N5S1 370 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC185Q8N715 623 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 PDCD7Q8N8D1 485 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SCG3Q8WXD2 468 aaKnown RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 RTP4Q96DX8 246 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 KIF12Q96FN5 646 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF778Q96MU6 729 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 NT5C1AQ9BXI3 368 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SMARCAD1Q9H4L7 1026 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CYP3A43Q9HB55 503 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 TMPRSS4Q9NRS4 437 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 PRMT7Q9NVM4 692 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 CORO1CQ9ULV4 474 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 SBF1O95248 1867 aa7.76□□□□□ -1.17
LIMA1-213ENST00000552720 TRIP12Q14669 1992 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-213ENST00000552720 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 BCLAF3A2AJT9 711 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 WDR27A2RRH5 827 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PRR5-ARHGAP8B1AHC4 643 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ADM5C9JUS6 153 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 KLF11O14901 512 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 HBP1O60381 514 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 HNRNPCL1O60812 293 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 LUC7L3O95232 432 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 MCF2P10911 925 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TGM2P21980 687 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 L1CAMP32004 1257 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 VHLP40337 213 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 CCNFP41002 786 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PHKA2P46019 1235 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 RPL10AP62906 217 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms