RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 FZD1Q9UP38 647 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 NR2E3Q9Y5X4 410 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 H7C0C1 242 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 I3L4J1 428 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 KCNN4O15554 427 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 GRAP2O75791 330 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 METTL18O95568 372 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 BPGMP07738 259 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ETS2P15036 469 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 GSTT1P30711 240 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ATP5OP48047 213 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 AP3M2P53677 418 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 YWHAEP62258 255 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 DSG1Q02413 1049 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CBLBQ13191 982 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PEX6Q13608 980 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CA9Q16790 459 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CDO1Q16878 200 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 DUOXA2Q1HG44 320 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CNPY1Q3B7I2 92 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 RABGAP1LQ5R372 815 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 C1orf146Q5VVC0 180 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 LPCAT4Q643R3 524 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 DENND5BQ6ZUT9 1274 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 EGFL6Q8IUX8 553 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TRIM42Q8IWZ5 723 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 NDUFAF2Q8N183 169 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PLD5Q8N7P1 536 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SLC4A11Q8NBS3 891 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 NSUN6Q8TEA1 469 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PRPF31Q8WWY3 499 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 MTBPQ96DY7 904 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ZBED3Q96IU2 234 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 MAGEB5Q9BZ81 275 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SHCBP1LQ9BZQ2 653 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TRIM4Q9C037 500 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ELOVL4Q9GZR5 314 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 FAM192AQ9GZU8 254 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 IQCGQ9H095 443 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 LHX5Q9H2C1 402 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SMYD3Q9H7B4 428 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 NDE1Q9NXR1 346 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 DNAJB4Q9UDY4 337 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SIX4Q9UIU6 781 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF180Q9UJW8 692 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CPSF3Q9UKF6 684 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ADAMTS6Q9UKP5 1117 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 EMCNQ9ULC0 261 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TBC1D30Q9Y2I9 924 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CTDP1Q9Y5B0 961 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 KRT37O76014 449 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PDE5AO76074 875 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 MICAL2O94851 1124 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 APOEP02649 317 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 HMGCRP04035 888 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PRKCGP05129 697 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ATP5BP06576 529 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 APRTP07741 180 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 GJB1P08034 283 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SERPINA6P08185 405 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SRGAP2CP0DJJ0 459 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CYP3A5P20815 502 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 HMGB2P26583 209 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 POLR2BP30876 1174 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 RPS6KA3P51812 740 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CDK18Q07002 472 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TRPC3Q13507 836 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 CCNIQ14094 377 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TMEM132BQ14DG7 1078 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TARBP2Q15633 366 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SMAD1Q15797 465 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TEDDM1Q5T9Z0 273 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 C6orf163Q5TEZ5 329 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TMCO4Q5TGY1 634 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 WDR78Q5VTH9 848 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 EEF1DP3Q658K8 133 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ATG16L1Q676U5 607 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 KYAT3Q6YP21 454 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 STKLD1Q8NE28 680 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 UBA3Q8TBC4 463 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SLC7A3Q8WY07 619 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 MCRS1Q96EZ8 462 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 SIGLEC10Q96LC7 697 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 RILPQ96NA2 401 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 GBP5Q96PP8 586 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 RNF157Q96PX1 679 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ACO2Q99798 780 aaKnown RBP5.61□□□□□ -1.51
LIMA1-212ENST00000552491 APOL6Q9BWW8 343 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 WWP1Q9H0M0 922 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 TMEM134Q9H6X4 195 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 RSAD1Q9HA92 442 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 S100A14Q9HCY8 104 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 ETNK2Q9NVF9 386 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 AFG3L2Q9Y4W6 797 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 HEY1Q9Y5J3 304 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 PTPRFP10586 1907 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 FAM159BA6NKW6 160 aa5.61□□□□□ -1.51
LIMA1-212ENST00000552491 F5H423 210 aaPredicted RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms