RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PMS2CLQ68D20 193 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 PM20D1Q6GTS8 502 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 FOXR2Q6PJQ5 311 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 C11orf74Q86VG3 221 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 PGBD3Q8N328 593 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 KCNV2Q8TDN2 545 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 RLN3Q8WXF3 142 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 TFAP2BQ92481 460 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 DCLK3Q9C098 648 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 RXFP3Q9NSD7 469 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 HCN2Q9UL51 889 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 KIAA1257Q9ULG3 409 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 STRIP2Q9ULQ0 834 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 ZNF510Q9Y2H8 683 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 SPTBN2O15020 2390 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 PRRT4C9JH25 899 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 P4HA2O15460 535 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 PAEPP09466 180 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 SETSIPP0DME0 302 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 HOXB2P14652 356 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 DGKGP49619 791 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 KCNH2Q12809 1159 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 PLA2G2CQ5R387 149 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 TCEAL6Q6IPX3 200 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 RRAGAQ7L523 313 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 BHLHA9Q7RTU4 235 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 DENND1CQ8IV53 801 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 ARHGEF19Q8IW93 802 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 SIX6OS1Q8N1H7 587 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 OLIG1Q8TAK6 271 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 LMO3Q8TAP4 145 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 TCEAL3Q969E4 200 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 ERLEC1Q96DZ1 483 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 P2RY11Q96G91 374 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 SPACA7Q96KW9 195 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 SRRTQ9BXP5 876 aaKnown RBP17.11■□□□□ 0.33
VPS29-207ENST00000549970 VPS45Q9NRW7 570 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 AGO1Q9UL18 857 aaKnown RBP17.11■□□□□ 0.33
VPS29-207ENST00000549970 STARD13Q9Y3M8 1113 aa17.11■□□□□ 0.33
VPS29-207ENST00000549970 NUP205Q92621 2012 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 M0QYV0 167 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 RNF225M0QZC1 329 aaPredicted RBP17.1■□□□□ 0.33
VPS29-207ENST00000549970 CAVIN2O95810 425 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 GNA14O95837 355 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 CALCAP01258 141 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 LCP1P13796 627 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 BRD2P25440 801 aaKnown RBP17.1■□□□□ 0.33
VPS29-207ENST00000549970 NTSR1P30989 418 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 CHKAP35790 457 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 RGS7P49802 495 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 CAMK4Q16566 473 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 PKDCCQ504Y2 493 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 LCLAT1Q6UWP7 414 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 TRIM59Q8IWR1 403 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 CHPFQ8IZ52 775 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 FRMD1Q8N878 549 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 EDEM1Q92611 657 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 ACOX2Q99424 681 aa17.1■□□□□ 0.33
VPS29-207ENST00000549970 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.1■□□□□ 0.33
VPS29-207ENST00000549970 BCLAF3A2AJT9 711 aaKnown RBP17.09■□□□□ 0.33
VPS29-207ENST00000549970 YJEFN3A6XGL0 299 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 E7ENQ6 273 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 PIK3R2O00459 728 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 AFPP02771 609 aaKnown RBP17.09■□□□□ 0.33
VPS29-207ENST00000549970 CISD3P0C7P0 127 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 P2RY2P41231 377 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 DHPSP49366 369 aaPredicted RBP17.09■□□□□ 0.33
VPS29-207ENST00000549970 UBE2HP62256 183 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 FYB2Q5VWT5 728 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 BSPRYQ5W0U4 402 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 SDE2Q6IQ49 451 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 FMNL3Q8IVF7 1028 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 TRIML1Q8N9V2 468 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 RBBP8NLQ8NC74 664 aaPredicted RBP17.09■□□□□ 0.33
VPS29-207ENST00000549970 EHBP1Q8NDI1 1231 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 RNF139Q8WU17 664 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 KCTD13Q8WZ19 329 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 PLD4Q96BZ4 506 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 ZSWIM1Q9BR11 485 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 CNGB3Q9NQW8 809 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 OLA1Q9NTK5 396 aaKnown RBP17.09■□□□□ 0.33
VPS29-207ENST00000549970 KIAA1468Q9P260 1216 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 SFMBT1Q9UHJ3 866 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.09■□□□□ 0.33
VPS29-207ENST00000549970 NCOR2Q9Y618 2525 aa17.09■□□□□ 0.33
VPS29-207ENST00000549970 MAP3K13O43283 966 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 PENKP01210 267 aaPredicted RBP17.08■□□□□ 0.32
VPS29-207ENST00000549970 GABRG2P18507 467 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 KCNA4P22459 653 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 MARSP56192 900 aaKnown RBP17.08■□□□□ 0.32
VPS29-207ENST00000549970 DAOAP59103 153 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 GCNT1Q02742 428 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 CNGA2Q16280 664 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 MAP7D1Q3KQU3 841 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 IL31Q6EBC2 164 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 PMF1Q6P1K2 205 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 CYP2U1Q7Z449 544 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 CREBRFQ8IUR6 639 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 SLC35F5Q8WV83 523 aa17.08■□□□□ 0.32
VPS29-207ENST00000549970 INTS2Q9H0H0 1204 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms