RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 INTUQ9ULD6 942 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 STAP1Q9ULZ2 295 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 SYNJ2BP-COX16A0A087WUM0 186 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 TRUB2O95900 331 aaKnown RBP22.11■■□□□ 1.13
VPS29-206ENST00000549578 HMBSP08397 361 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 WEE1P30291 646 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 SULT1E1P49888 294 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 OGDHQ02218 1023 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 OTUD1Q5VV17 481 aaPredicted RBP22.11■■□□□ 1.13
VPS29-206ENST00000549578 TANGO2Q6ICL3 276 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 PARM1Q6UWI2 310 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 SH3RF2Q8TEC5 729 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 FGF14Q92915 247 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 TBCBQ99426 244 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 NPY6RQ99463 290 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 FAM204AQ9H8W3 233 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 TRPV4Q9HBA0 871 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 COX16Q9P0S2 106 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 CALCOCO1Q9P1Z2 691 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 CTTNBP2NLQ9P2B4 639 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 RCCD1A6NED2 376 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 TMEM191CA6NGB0 347 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 IRF1P10914 325 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 GPD1P21695 349 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 SDC4P31431 198 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 KRT83P78385 493 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 ATP11AP98196 1134 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 C15orf59Q2T9L4 293 aaPredicted RBP22.1■■□□□ 1.13
VPS29-206ENST00000549578 SLC25A52Q3SY17 297 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 CCDC14Q49A88 953 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 ADAMTS19Q8TE59 1207 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 NT5C3BQ969T7 300 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 WBP2Q969T9 261 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 LRRC3BQ96PB8 259 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 KXD1Q9BQD3 176 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 ZFP14Q9HCL3 533 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 DDIT4Q9NX09 232 aa22.1■■□□□ 1.13
VPS29-206ENST00000549578 M0QYT0 321 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 LEFTY2O00292 366 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 SCAMP3O14828 347 aaKnown RBP22.09■■□□□ 1.13
VPS29-206ENST00000549578 IGLV3-25P01717 112 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 BMP1P13497 986 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 ZP2Q05996 745 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 NME3Q13232 169 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 CDO1Q16878 200 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 SH3PXD2AQ5TCZ1 1133 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 ADHFE1Q8IWW8 467 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 CELF5Q8N6W0 485 aaKnown RBP22.09■■□□□ 1.13
VPS29-206ENST00000549578 ZNF564Q8TBZ8 553 aaPredicted RBP22.09■■□□□ 1.13
VPS29-206ENST00000549578 BTBD6Q96KE9 485 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 SERPINB11Q96P15 392 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 OSGEPQ9NPF4 335 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 RRN3Q9NYV6 651 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 CFAP97Q9P2B7 532 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 LIMD1Q9UGP4 676 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 ADGRG1Q9Y653 693 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 NUMBLQ9Y6R0 609 aa22.09■■□□□ 1.13
VPS29-206ENST00000549578 TCF20Q9UGU0 1960 aaKnown RBP22.09■■□□□ 1.13
VPS29-206ENST00000549578 A0A0U1RQJ8 604 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 HEPACAM2A8MVW5 462 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 LOC730098B7Z3J9 87 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 DPYSL4O14531 572 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 IRAK2O43187 625 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 VAV2P52735 878 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 ZNF143P52747 638 aaPredicted RBP22.08■■□□□ 1.13
VPS29-206ENST00000549578 COG7P83436 770 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 ZNF252P-AS1Q0IIN9 211 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 HTR4Q13639 388 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 TRIP4Q15650 581 aaPredicted RBP22.08■■□□□ 1.13
VPS29-206ENST00000549578 RAB6CQ53S08 254 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 MTSS1LQ765P7 747 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 KIAA1328Q86T90 577 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 ZDHHC14Q8IZN3 488 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 PLCD3Q8N3E9 789 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 SLC35G2Q8TBE7 412 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 ATRIPQ8WXE1 791 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 RSAD2Q8WXG1 361 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 RFFLQ8WZ73 363 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 RPP25Q9BUL9 199 aaKnown RBP22.08■■□□□ 1.13
VPS29-206ENST00000549578 LACRTQ9GZZ8 138 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 RAB6CQ9H0N0 254 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 KIF9Q9HAQ2 790 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 UVRAGQ9P2Y5 699 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 PRKAG3Q9UGI9 489 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 ANAPC7Q9UJX3 599 aa22.08■■□□□ 1.13
VPS29-206ENST00000549578 HBS1LQ9Y450 684 aaKnown RBP22.08■■□□□ 1.13
VPS29-206ENST00000549578 ANHXE9PGG2 379 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 CCP110O43303 1012 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 STC2O76061 302 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 PTPN9P43378 593 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 ATXN1P54253 815 aaKnown RBP22.07■■□□□ 1.12
VPS29-206ENST00000549578 TBX4P57082 545 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 USP4Q13107 963 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 ZNF77Q15935 545 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 PLA2G2FQ9BZM2 168 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 PIGVQ9NUD9 493 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 TLR6Q9Y2C9 796 aa22.07■■□□□ 1.12
VPS29-206ENST00000549578 PSMA2P25787 234 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 GBP1P32455 592 aa22.06■■□□□ 1.12
VPS29-206ENST00000549578 DEUP1Q05D60 604 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms