RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 NUP210Q8TEM1 1887 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-213ENST00000546820 MDM4O15151 490 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 F9P00740 461 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 IRF1P10914 325 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 SLC2A3P11169 496 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 IFNAR2P48551 515 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 TBX4P57082 545 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 GPC5P78333 572 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 ZXDBP98169 803 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 USP4Q13107 963 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 NR1H3Q13133 447 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 NNTQ13423 1086 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 GSE1Q14687 1217 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 TRIP4Q15650 581 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 C10orf76Q5T2E6 689 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 DCUN1D2Q6PH85 259 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 SND1Q7KZF4 910 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 PHLDB2Q86SQ0 1253 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 CCDC170Q8IYT3 715 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 C3orf20Q8ND61 904 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 DQX1Q8TE96 717 aaKnown RBP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 OSCP1Q8WVF1 389 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 KHSRPQ92945 711 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 PIWIL1Q96J94 861 aaKnown RBP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 ZFRQ96KR1 1074 aaKnown RBP14.36□□□□□ -0.11
PTCH1-213ENST00000546820 LRRC3BQ96PB8 259 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 SMOC2Q9H3U7 446 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 TRPV5Q9NQA5 729 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 SLC2A4RGQ9NR83 387 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 MUTYHQ9UIF7 546 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 TMEM59LQ9UK28 342 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 DUSP12Q9UNI6 340 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 PAXBP1Q9Y5B6 917 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 SCINQ9Y6U3 715 aa14.36□□□□□ -0.11
PTCH1-213ENST00000546820 DCXO43602 365 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 STC2O76061 302 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 TRUB2O95900 331 aaKnown RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 HMBSP08397 361 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 PDGFRAP16234 1089 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 RRM1P23921 792 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 CYLC1P35663 651 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 ZXDAP98168 799 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 AMPD2Q01433 879 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 GFPT1Q06210 699 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 RING1Q06587 406 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 MTA1Q13330 715 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 ASTE1Q2TB18 679 aaPredicted RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 SLC25A52Q3SY17 297 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 NUGGCQ68CJ6 796 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 OLIG1Q8TAK6 271 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 DNASE1L2Q92874 299 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 ATP2A3Q93084 1043 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 RNF34Q969K3 372 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 FAM83CQ9BQN1 747 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 DDX23Q9BUQ8 820 aaKnown RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 FAM204AQ9H8W3 233 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 LUC7LQ9NQ29 371 aaKnown RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 METTL5Q9NRN9 209 aaKnown RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 CNOT8Q9UFF9 292 aaKnown RBP14.35□□□□□ -0.11
PTCH1-213ENST00000546820 FBXL21Q9UKT6 434 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 TLR6Q9Y2C9 796 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 C5orf42Q9H799 3197 aa14.35□□□□□ -0.11
PTCH1-213ENST00000546820 M0QYT0 321 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 IPO7O95373 1038 aaKnown RBP14.34□□□□□ -0.11
PTCH1-213ENST00000546820 NFATC1O95644 943 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 APOEP02649 317 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 GLULP15104 373 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 ABCB4P21439 1286 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 CORO1AP31146 461 aaKnown RBP14.34□□□□□ -0.11
PTCH1-213ENST00000546820 SDC4P31431 198 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 CHKAP35790 457 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 SLC11A2P49281 568 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 ADGRG2Q8IZP9 1017 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 ADAM32Q8TC27 787 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 RXFP2Q8WXD0 754 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 EDAQ92838 391 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 AZIN2Q96A70 460 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 ZNF653Q96CK0 615 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 NPY6RQ99463 290 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 BAG1Q99933 345 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-213ENST00000546820 DDX50Q9BQ39 737 aaKnown RBP14.34□□□□□ -0.11
PTCH1-213ENST00000546820 LINC00597Q9H2U6 94 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 DDIT4Q9NX09 232 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 MYO1AQ9UBC5 1043 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 WNT16Q9UBV4 365 aa14.34□□□□□ -0.11
PTCH1-213ENST00000546820 SPTBN5Q9NRC6 3674 aaKnown RBP14.34□□□□□ -0.11
PTCH1-213ENST00000546820 TNFRSF10AO00220 468 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 MSI1O43347 362 aaKnown RBP14.33□□□□□ -0.12
PTCH1-213ENST00000546820 NARSO43776 548 aaKnown RBP14.33□□□□□ -0.12
PTCH1-213ENST00000546820 LATS1O95835 1130 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 H2AFZP0C0S5 128 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 GPD1P21695 349 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 CCR1P32246 355 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 RFC1P35251 1148 aaPredicted RBP14.33□□□□□ -0.12
PTCH1-213ENST00000546820 SULT1E1P49888 294 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 MLLT6P55198 1093 aaPredicted RBP14.33□□□□□ -0.12
PTCH1-213ENST00000546820 DEUP1Q05D60 604 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 NME3Q13232 169 aa14.33□□□□□ -0.12
PTCH1-213ENST00000546820 MAMLD1Q13495 774 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms