RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 NDST1P52848 882 aa12.88□□□□□ -0.35
COL4A6-209ENST00000545689 SLC6A3Q01959 620 aa12.88□□□□□ -0.35
COL4A6-209ENST00000545689 RUNX1T1Q06455 604 aa12.88□□□□□ -0.35
COL4A6-209ENST00000545689 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL4A6-209ENST00000545689 P3H2Q8IVL5 708 aa12.88□□□□□ -0.35
COL4A6-209ENST00000545689 EMC1Q8N766 993 aa12.88□□□□□ -0.35
COL4A6-209ENST00000545689 FAM95CA0A1B0GW59 222 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 EML1O00423 815 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 VPS4BO75351 444 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 PPP3CCP48454 512 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 MARSP56192 900 aaKnown RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ELAVL2Q12926 359 aaKnown RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 AMHR2Q16671 573 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CBWD6Q4V339 395 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CBWD3Q5JTY5 395 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CBWD5Q5RIA9 395 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 OXNAD1Q96HP4 312 aaPredicted RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ADGRE3Q9BY15 652 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ITGALP20701 1170 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 HYIQ5T013 277 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 HDAC7Q8WUI4 952 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 GLT1D1Q96MS3 346 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ASB2Q96Q27 587 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 TKTP29401 623 aaKnown RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 THPOP40225 353 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CD151P48509 253 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 MAP3K7CLP57077 242 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 DAB2P98082 770 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CHRNB3Q05901 458 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 KCNK18Q7Z418 384 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 GPR141Q7Z602 305 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 FAM131BQ86XD5 332 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 HERC6Q8IVU3 1022 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 PORCNQ9H237 461 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 SORCS3Q9UPU3 1222 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ASTN1O14525 1302 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 WASHC5Q12768 1159 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 KYQ8NBH2 561 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 SPATA20Q8TB22 786 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 EPS8L1Q8TE68 723 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 DNAJC19Q96DA6 116 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 SGF29Q96ES7 293 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CNBD2Q96M20 576 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 SKAP2O75563 359 aaPredicted RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 NPM3O75607 178 aaKnown RBP12.87□□□□□ -0.35
COL4A6-209ENST00000545689 B3GAT3O94766 335 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 ARIH2O95376 493 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 GRIK4Q16099 956 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 LAYNQ6UX15 382 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 MFSD7Q6UXD7 560 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 IL1RL2Q9HB29 575 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 GPAMQ9HCL2 828 aa12.87□□□□□ -0.35
COL4A6-209ENST00000545689 CCR1P32246 355 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 RANBP1P43487 201 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ERFP50548 548 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 N4BP2L1Q5TBK1 243 aaPredicted RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 PCSK9Q8NBP7 692 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 TCP10LQ8TDR4 215 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 HES6Q96HZ4 224 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 PAWRQ96IZ0 340 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 SYT15Q9BQS2 421 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ERI2A8K979 691 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 MYCP01106 439 aaPredicted RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 CDK16Q00536 496 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 MAD2L1Q13257 205 aaPredicted RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ZNF280DQ6N043 979 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ZFP1Q6P2D0 407 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 CENPLQ8N0S6 344 aaPredicted RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 CYP2W1Q8TAV3 490 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ETNPPLQ8TBG4 499 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 FBXO44Q9H4M3 255 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 TCF7L2Q9NQB0 619 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 HLA-DPA1P20036 260 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 CXCL9Q07325 125 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 PCBP1Q15365 356 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 SMARCD1Q96GM5 515 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 LRRC19Q9H756 370 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 KCNK4Q9NYG8 393 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 KANSL3Q9P2N6 904 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 JCHAINP01591 159 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 UNC93AQ86WB7 457 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 FAM71AQ8IYT1 594 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 BAP1Q92560 729 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 HAS1Q92839 578 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 PLEKHA8Q96JA3 519 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 SRPK1Q96SB4 655 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 CHST12Q9NRB3 414 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ATP11BQ9Y2G3 1177 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 H3BRB1 525 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 UBDO15205 165 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 TRIM13O60858 407 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ERBB2P04626 1255 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 YWHAZP63104 245 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 SLC34A1Q06495 639 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 TBL3Q12788 808 aaKnown RBP12.86□□□□□ -0.35
COL4A6-209ENST00000545689 NFYCQ13952 458 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 NFIL3Q16649 462 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 ZNF398Q8TD17 642 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 VPS33AQ96AX1 596 aa12.86□□□□□ -0.35
COL4A6-209ENST00000545689 TUT1Q9H6E5 874 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms