RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 FAM160B1Q5W0V3 765 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 MBLAC2Q68D91 279 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 MPZL3Q6UWV2 235 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 MARK2Q7KZI7 788 aaKnown RBP9.06□□□□□ -0.96
TDP1-204ENST00000545686 SDCCAG8Q86SQ7 713 aaPredicted RBP9.06□□□□□ -0.96
TDP1-204ENST00000545686 CCDC33Q8N5R6 958 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 DNERQ8NFT8 737 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 FAM167AQ96KS9 214 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 C12orf42Q96LP6 360 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 HAPLN3Q96S86 360 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 TTC1Q99614 292 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 TEX13BQ9BXU2 312 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 CYP3A43Q9HB55 503 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 STK32BQ9NY57 414 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 ZBTB12Q9Y330 459 aaPredicted RBP9.06□□□□□ -0.96
TDP1-204ENST00000545686 COMMD3-BMI1R4GMX3 469 aa9.06□□□□□ -0.96
TDP1-204ENST00000545686 RALGAPA2Q2PPJ7 1873 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PLXNA1Q9UIW2 1896 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 HMX2A2RU54 273 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 TTLL13PA6NNM8 815 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 CYB561D2O14569 222 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 CILPO75339 1184 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BAG2O95816 211 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 APRTP07741 180 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PABPC4LP0CB38 370 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 GPD2P43304 727 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 CLCN2P51788 898 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BACE1P56817 501 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BCAR1P56945 870 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BMPR2Q13873 1038 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 UBAP2LQ14157 1087 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 CNPY1Q3B7I2 92 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BOLA3Q53S33 107 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 STEAP4Q687X5 459 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PGM2L1Q6PCE3 622 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 TSHZ1Q6ZSZ6 1077 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 RFX8Q6ZV50 586 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 RAPH1Q70E73 1250 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 EXOC8Q8IYI6 725 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 NME8Q8N427 588 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PPP1R14CQ8TAE6 165 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 ACTRT2Q8TDY3 377 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PRPF31Q8WWY3 499 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 SIGLEC10Q96LC7 697 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 NLRP4Q96MN2 994 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 LBHD1Q9BQE6 289 aaPredicted RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 ZNF670Q9BS34 389 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 VRTNQ9H8Y1 702 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 AS3MTQ9HBK9 375 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 DNAJC28Q9NX36 388 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 MARCOQ9UEW3 520 aaPredicted RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 APOBEC2Q9Y235 224 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 EVPLQ92817 2033 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 MYO18AQ92614 2054 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 M0QYV0 167 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PEX1O43933 1283 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 GCATO75600 419 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 KITP10721 976 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 VDRP11473 427 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 UQCRBP14927 111 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 GRK2P25098 689 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 RBL1P28749 1068 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PRDX6P30041 224 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 MED21Q13503 144 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 FASTKD1Q53R41 847 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 C1orf228Q6PIY5 440 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 ZNF534Q76KX8 674 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 ADGRF2Q8IZF7 708 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PQLC3Q8N755 202 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 DEPDC1BQ8WUY9 529 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 ATP2A3Q93084 1043 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 CMTM5Q96DZ9 223 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 TMEM176AQ96HP8 235 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 BTBD9Q96Q07 612 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 EBF4Q9BQW3 602 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 KLHL4Q9C0H6 718 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 C20orf27Q9GZN8 174 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 EPB41L1Q9H4G0 881 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 NRDE2Q9H7Z3 1164 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 PTPRHQ9HD43 1115 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 MOCS1Q9NZB8 636 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 NDUFA13Q9P0J0 144 aa9.05□□□□□ -0.96
TDP1-204ENST00000545686 NXF1Q9UBU9 619 aaKnown RBP9.05□□□□□ -0.96
TDP1-204ENST00000545686 SF3B1O75533 1304 aaKnown RBP eCLIP9.04□□□□□ -0.964e-7■■■■■ 133.7
TDP1-204ENST00000545686 SMIM31A0A1B0GVY4 71 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 CASQ2O14958 399 aaPredicted RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 MDM4O15151 490 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 AP1G1O43747 822 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 UGT1A9O60656 530 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 RNASEH1O60930 286 aaKnown RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 ALDH1A2O94788 518 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 GSRP00390 522 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 SERPINE1P05121 402 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 C6orf222P0C671 652 aaPredicted RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 ZCCHC18P0CG32 403 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 FGF3P11487 239 aaPredicted RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 P4HA1P13674 534 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 DESP17661 470 aa9.04□□□□□ -0.96
TDP1-204ENST00000545686 ACAT1P24752 427 aaKnown RBP9.04□□□□□ -0.96
TDP1-204ENST00000545686 ATICP31939 592 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms