RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 H0YCG3 227 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 K7ENM7 598 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 VILLO15195 856 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 JAK2O60674 1132 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 SEMA4FO95754 770 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 TBX18O95935 607 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 AFPP02771 609 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 CKMT2P17540 419 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 CR2P20023 1033 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 YWHAQP27348 245 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 SLC12A3P55017 1021 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 ZNF234Q14588 700 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 LINC00303Q3SY05 128 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 MDH1BQ5I0G3 518 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 TTC38Q5R3I4 469 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 KRT79Q5XKE5 535 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 HTR3DQ70Z44 454 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 SYT2Q8N9I0 419 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 KRI1Q8N9T8 703 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 SCAMP5Q8TAC9 235 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 FBXO32Q969P5 355 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 VCPIP1Q96JH7 1222 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 DUSP9Q99956 384 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 ACE2Q9BYF1 805 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 HSPBP1Q9NZL4 362 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 LARSQ9P2J5 1176 aaKnown RBP16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 CDH9Q9ULB4 789 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 SRPK3Q9UPE1 567 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 NME7Q9Y5B8 376 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 LRBAP50851 2863 aa16.3■□□□□ 0.2
CLSTN3-216ENST00000545663 CENPEQ02224 2701 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 WNT9AO14904 365 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 IGHV4-34P06331 123 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 EPHX1P07099 455 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 KRT19P08727 400 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 CDH8P55286 799 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 ILKQ13418 452 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 HS2ST1Q7LGA3 356 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 LRRC52Q8N7C0 313 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 MYCBPAPQ8TBZ2 947 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 KCNN1Q92952 543 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 ZNF518BQ9C0D4 1074 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 EBF2Q9HAK2 575 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 ASCL3Q9NQ33 180 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 STARD5Q9NSY2 213 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 ADAMTS1Q9UHI8 967 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 SIX4Q9UIU6 781 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 FBXO10Q9UK96 956 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 FBN2P35556 2912 aa16.29■□□□□ 0.2
CLSTN3-216ENST00000545663 CLDN5O00501 218 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 USP12O75317 370 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 DXOO77932 396 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 ITGB6P18564 788 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 ZNF132P52740 706 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 MFAP3P55082 362 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 TRIM29Q14134 588 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 LIMS2Q7Z4I7 341 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 MYCT1Q8N699 235 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 LHX5Q9H2C1 402 aa16.28■□□□□ 0.2
CLSTN3-216ENST00000545663 IL18RAPO95256 599 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 PLA2G4BP0C869 781 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 EPHA8P29322 1005 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 BCAT1P54687 386 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 ERVPABLB-1P60509 514 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 RACK1P63244 317 aaKnown RBP16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 ORC2Q13416 577 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 NUP93Q8N1F7 819 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 KCNK16Q96T55 309 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 REEP2Q9BRK0 252 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 KLF16Q9BXK1 252 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 TM6SF1Q9BZW5 370 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 NACA2Q9H009 215 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 BTBD1Q9H0C5 482 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 STYXL1Q9Y6J8 313 aa16.27■□□□□ 0.2
CLSTN3-216ENST00000545663 ARID1BQ8NFD5 2236 aaPredicted RBP16.27■□□□□ 0.19
CLSTN3-216ENST00000545663 ACP1P24666 158 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 LSSP48449 732 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 TLE1Q04724 770 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 ST3GAL1Q11201 340 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 MAPRE1Q15691 268 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 PROX2Q3B8N5 592 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 SFMBT2Q5VUG0 894 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 SNX30Q5VWJ9 437 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 CCDC81Q6ZN84 652 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 KANSL1Q7Z3B3 1105 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 NT5DC4Q86YG4 428 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 LSMEM2Q8N112 164 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 ZNF366Q8N895 744 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 RBBP8NLQ8NC74 664 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 NSUN7Q8NE18 718 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 PDZD8Q8NEN9 1154 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 OR2T3Q8NH03 318 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 FIZ1Q96SL8 496 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 FAM213AQ9BRX8 229 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 POLR1BQ9H9Y6 1135 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 ELOVL2Q9NXB9 296 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 CLEC4EQ9ULY5 219 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 MAN2B2Q9Y2E5 1009 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 SLC27A6Q9Y2P4 619 aa16.26■□□□□ 0.19
CLSTN3-216ENST00000545663 TP53BP1Q12888 1972 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms