RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 KIAA1257Q9ULG3 409 aa13.77□□□□□ -0.21
RTN3-213ENST00000543552 PLXND1Q9Y4D7 1925 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 TM4SF5O14894 197 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 XPO1O14980 1071 aaKnown RBP13.76□□□□□ -0.21
RTN3-213ENST00000543552 ZBED1O96006 694 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 SETSIPP0DME0 302 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 CORO1AP31146 461 aaKnown RBP13.76□□□□□ -0.21
RTN3-213ENST00000543552 TKTL1P51854 596 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 ZNF132P52740 706 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 YWHAGP61981 247 aaKnown RBP eCLIP13.76□□□□□ -0.21
RTN3-213ENST00000543552 BST2Q10589 180 aaKnown RBP13.76□□□□□ -0.21
RTN3-213ENST00000543552 STARD3Q14849 445 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 GOLGA7BQ2TAP0 167 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 MAP7D1Q3KQU3 841 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 RAB41Q5JT25 222 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 EGFLAMQ63HQ2 1017 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 ANKRD40Q6AI12 368 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 SYT12Q8IV01 421 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 SIX6OS1Q8N1H7 587 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 ENGASEQ8NFI3 743 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 UCMAQ8WVF2 138 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 RLN3Q8WXF3 142 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 PLD4Q96BZ4 506 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 DHTKD1Q96HY7 919 aaPredicted RBP13.76□□□□□ -0.21
RTN3-213ENST00000543552 CEP63Q96MT8 703 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 GABRG3Q99928 467 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 LRRC4Q9HBW1 653 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 ZDHHC4Q9NPG8 344 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 TSPAN16Q9UKR8 245 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 SLC27A6Q9Y2P4 619 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 NUP205Q92621 2012 aa13.76□□□□□ -0.21
RTN3-213ENST00000543552 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 ANTXRLA6NF34 631 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 PENKP01210 267 aaPredicted RBP13.75□□□□□ -0.21
RTN3-213ENST00000543552 CD19P15391 556 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 GABRG2P18507 467 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 ZNF445P59923 1031 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 RPL6Q02878 288 aaKnown RBP13.75□□□□□ -0.21
RTN3-213ENST00000543552 PM20D1Q6GTS8 502 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 ELOA2Q8IYF1 753 aaPredicted RBP13.75□□□□□ -0.21
RTN3-213ENST00000543552 TMEFF1Q8IYR6 380 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 CEP76Q8TAP6 659 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 IPO4Q8TEX9 1081 aaKnown RBP13.75□□□□□ -0.21
RTN3-213ENST00000543552 RNF139Q8WU17 664 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 TATDN2Q93075 761 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 BHMTQ93088 406 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 SLC35C1Q96A29 364 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 CNTNAP3BQ96NU0 1288 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 CNTNAP3Q9BZ76 1288 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 CALCOCO1Q9P1Z2 691 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 ANGPTL2Q9UKU9 493 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 ABCA7Q8IZY2 2146 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 CHD8Q9HCK8 2581 aa13.75□□□□□ -0.21
RTN3-213ENST00000543552 A0A1W2PQF6 199 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 SLC12A8A0AV02 714 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 BICDL2A1A5D9 508 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 C4orf47A7E2U8 309 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 TRIM24O15164 1050 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 PMM2O15305 246 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 KCNK5O95279 499 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 HMBSP08397 361 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 PAEPP09466 180 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 VDRP11473 427 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 WASP42768 502 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 HARS2P49590 506 aaKnown RBP13.74□□□□□ -0.21
RTN3-213ENST00000543552 PDE4CQ08493 712 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 EIF4HQ15056 248 aaKnown RBP13.74□□□□□ -0.21
RTN3-213ENST00000543552 STILQ15468 1287 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 CCDC40Q4G0X9 1142 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 TRIM61Q5EBN2 209 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 FOXR2Q6PJQ5 311 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 TOGARAM2Q6ZUX3 1019 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 ARMCX6Q7L4S7 300 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 ANKS1BQ7Z6G8 1248 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 CPXM2Q8N436 756 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 NT5C1BQ96P26 610 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 SLC2A11Q9BYW1 496 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 ULBP1Q9BZM6 244 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 PLK2Q9NYY3 685 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 MBD1Q9UIS9 605 aaPredicted RBP13.74□□□□□ -0.21
RTN3-213ENST00000543552 FBXO10Q9UK96 956 aa13.74□□□□□ -0.21
RTN3-213ENST00000543552 AGO1Q9UL18 857 aaKnown RBP13.74□□□□□ -0.21
RTN3-213ENST00000543552 HBS1LQ9Y450 684 aaKnown RBP13.74□□□□□ -0.21
RTN3-213ENST00000543552 MYO18AQ92614 2054 aaKnown RBP13.73□□□□□ -0.21
RTN3-213ENST00000543552 TRIM49BA6NDI0 452 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 PRRT4C9JH25 899 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 P4HA2O15460 535 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 KLKB1P03952 638 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 CISD3P0C7P0 127 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 NDUFV2P19404 249 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 PTGER3P43115 390 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 FMO5P49326 533 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 NOVA1P51513 510 aaKnown RBP13.73□□□□□ -0.21
RTN3-213ENST00000543552 PMS1P54277 932 aaKnown RBP13.73□□□□□ -0.21
RTN3-213ENST00000543552 MFAP3P55082 362 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 ADIGQ0VDE8 80 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 FYB2Q5VWT5 728 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 PEAR1Q5VY43 1037 aaPredicted RBP13.73□□□□□ -0.21
RTN3-213ENST00000543552 PSAPL1Q6NUJ1 521 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 DENND1CQ8IV53 801 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms