RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, human

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF1A-215	ENST00000543359	LSM7	Q9UK45	103 aa	Known RBP	13.74	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	AGO1	Q9UL18	857 aa	Known RBP	13.74	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ZNF510	Q9Y2H8	683 aa		13.74	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PRRT4	C9JH25	899 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	NEDD8-MDP1	E9PL57	170 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	GFRA2	O00451	464 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	EPN2	O95208	641 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	FGFR1OP	O95684	399 aa	Known RBP	13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CCDC192	P0DO97	292 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	BRD2	P25440	801 aa	Known RBP	13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CORO1A	P31146	461 aa	Known RBP	13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PLA2G2C	Q5R387	149 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	MLKL	Q8NB16	471 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	MDGA1	Q8NFP4	955 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CNGB3	Q9NQW8	809 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	DNAJC17	Q9NVM6	304 aa	Known RBP	13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	USP18	Q9UMW8	372 aa		13.73	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	SLC12A8	A0AV02	714 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PRR5-ARHGAP8	B1AHC4	643 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	HMBS	P08397	361 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	LCP1	P13796	627 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	SLC9A1	P19634	815 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	GPD2	P43304	727 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	RGS7	P49802	495 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ARHGAP8	P85298	464 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	APBA1	Q02410	837 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	LMNB2	Q03252	620 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	STIL	Q15468	1287 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	C10orf76	Q5T2E6	689 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	GRAMD4	Q6IC98	578 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ANO7	Q6IWH7	933 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	DPY19L2P1	Q6NXN4	242 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	GJB7	Q6PEY0	223 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ERMP1	Q7Z2K6	904 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	DENND1C	Q8IV53	801 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	FMNL3	Q8IVF7	1028 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CLEC4C	Q8WTT0	213 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	EDEM1	Q92611	657 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	HSFY1	Q96LI6	401 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	IPO9	Q96P70	1041 aa	Known RBP	13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	XPO6	Q96QU8	1125 aa	Known RBP	13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ACOX2	Q99424	681 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CRACR2A	Q9BSW2	395 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	DCLK3	Q9C098	648 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ARRDC1-AS1	Q9H2J1	176 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	LMBRD1	Q9NUN5	540 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PLK2	Q9NYY3	685 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CLEC4E	Q9ULY5	219 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CEP295	Q9C0D2	2601 aa		13.72	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CHD8	Q9HCK8	2581 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PLXND1	Q9Y4D7	1925 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359		A0A1W2PQF6	199 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	BECN2	A8MW95	431 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359		M0QYV0	167 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PIK3R2	O00459	728 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	FYN	P06241	537 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ZNF806	P0C7X5	589 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	BCKDHB	P21953	392 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ATXN1	P54253	815 aa	Known RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	MAP7D1	Q3KQU3	841 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PREPL	Q4J6C6	727 aa	Predicted RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	EOGT	Q5NDL2	527 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	EGFLAM	Q63HQ2	1017 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	MSANTD2	Q6P1R3	559 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	TRIM65	Q6PJ69	517 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PRR23C	Q6ZRP0	262 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	RSRC2	Q7L4I2	434 aa	Known RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	SIX6OS1	Q8N1H7	587 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CPXM2	Q8N436	756 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	IRGQ	Q8WZA9	623 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PLD4	Q96BZ4	506 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	PIWIL1	Q96J94	861 aa	Known RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	TPSD1	Q9BZJ3	242 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	UBE2T	Q9NPD8	197 aa	Predicted RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ACP6	Q9NPH0	428 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	ABCC13	Q9NSE7	274 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	SFMBT1	Q9UHJ3	866 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	CYTH4	Q9UIA0	394 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	STOML2	Q9UJZ1	356 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	STRIP2	Q9ULQ0	834 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	INVS	Q9Y283	1065 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	SLC27A6	Q9Y2P4	619 aa		13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	HBS1L	Q9Y450	684 aa	Known RBP	13.71	□□□□□ -0.21
TNFRSF1A-215	ENST00000543359	THADA	Q6YHU6	1953 aa		13.71	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	NUP205	Q92621	2012 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	GTPBP10	A4D1E9	387 aa	Known RBP	13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	GDF9	O60383	454 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	IGLV3-27	P01718	113 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	PON1	P27169	355 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	NTSR1	P30989	418 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	CHKA	P35790	457 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	DGKG	P49619	791 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	MFAP3	P55082	362 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	DPCR1	Q3MIW9	517 aa		13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	USP39	Q53GS9	565 aa	Known RBP	13.7	□□□□□ -0.22
TNFRSF1A-215	ENST00000543359	DENND1B	Q6P3S1	775 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms