RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RTP4Q96DX8 246 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 CFAP36Q96G28 342 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 PHACTR1Q9C0D0 580 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 CFAP69A5D8W1 941 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 GOLGA8RI6L899 631 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 M0QYT0 321 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 NRP1O14786 923 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 METTL18O95568 372 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 FAM200BP0CF97 657 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 KRT4P19013 534 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 CA4P22748 312 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 CD52P31358 61 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 OTUD1Q5VV17 481 aaPredicted RBP16.93■□□□□ 0.3
COL4A1-204ENST00000543140 VSIG1Q86XK7 387 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 SYT15Q9BQS2 421 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 RHOBTB2Q9BYZ6 727 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 KLC2Q9H0B6 622 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 TMEM30AQ9NV96 361 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 TEX264Q9Y6I9 313 aa16.93■□□□□ 0.3
COL4A1-204ENST00000543140 TCRBV9S1A1TA0A576 114 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 DNM1LO00429 736 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 GHRP10912 638 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 ATP2A2P16615 1042 aaKnown RBP16.92■□□□□ 0.3
COL4A1-204ENST00000543140 MSH2P43246 934 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 CACNA2D1P54289 1103 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 FCGRTP55899 365 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 SLC45A4Q5BKX6 768 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 NCBP2-AS2Q69YL0 99 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 CDKL3Q8IVW4 592 aaPredicted RBP16.92■□□□□ 0.3
COL4A1-204ENST00000543140 HACE1Q8IYU2 909 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 PCED1BQ96HM7 432 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 KLF6Q99612 283 aaPredicted RBP16.92■□□□□ 0.3
COL4A1-204ENST00000543140 DTLQ9NZJ0 730 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 GGT7Q9UJ14 662 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 FZD10Q9ULW2 581 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 ABT1Q9ULW3 272 aaKnown RBP16.92■□□□□ 0.3
COL4A1-204ENST00000543140 HTTP42858 3142 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 CREB3O43889 395 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 SNX3O60493 162 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 DAB1O75553 588 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 AP1G2O75843 785 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 POMCP01189 267 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 ASGR1P07306 291 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 ARL4AP40617 200 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 PRKCZQ05513 592 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 SREBF2Q12772 1141 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 PAXIP1Q6ZW49 1069 aaPredicted RBP16.92■□□□□ 0.3
COL4A1-204ENST00000543140 GPRIN1Q7Z2K8 1008 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 CCT6BQ92526 530 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 MAGEB18Q96M61 343 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 LGMNQ99538 433 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 ULBP1Q9BZM6 244 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 XPNPEP3Q9NQH7 507 aa16.92■□□□□ 0.3
COL4A1-204ENST00000543140 CA12O43570 354 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 MGEA5O60502 916 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 IL9RQ01113 521 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CACNB2Q08289 660 aaPredicted RBP16.91■□□□□ 0.3
COL4A1-204ENST00000543140 KCNA10Q16322 511 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 KLHL38Q2WGJ6 581 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 KBTBD12Q3ZCT8 623 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 ADGRD1Q6QNK2 874 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 FAM47EQ6ZV65 393 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CAND1Q86VP6 1230 aaKnown RBP16.91■□□□□ 0.3
COL4A1-204ENST00000543140 HASPINQ8TF76 798 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 DCAKDQ8WVC6 231 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 SGSM3Q96HU1 749 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 SMOQ99835 787 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 PIGVQ9NUD9 493 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 PADI3Q9ULW8 664 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 USP3Q9Y6I4 520 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CCT8L1PA6NM43 557 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 YJEFN3A6XGL0 299 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 ZNF487B1APH4 448 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 E7ENQ6 273 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 H0YHG0 523 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 USP17L7P0C7H9 530 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 ZFXP17010 805 aaPredicted RBP16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CCND3P30281 292 aaPredicted RBP16.91■□□□□ 0.3
COL4A1-204ENST00000543140 NOS2P35228 1153 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CAP1Q01518 475 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 SLC1A5Q15758 541 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 TIGD5Q53EQ6 642 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 DENND1AQ8TEH3 1009 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 KCTD13Q8WZ19 329 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 SPOCK2Q92563 424 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CYTH2Q99418 400 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 NPY6RQ99463 290 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 TRIM56Q9BRZ2 755 aaKnown RBP16.91■□□□□ 0.3
COL4A1-204ENST00000543140 PPCSQ9HAB8 311 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 ARHGEF4Q9NR80 690 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CHST12Q9NRB3 414 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 GRID1Q9ULK0 1009 aa16.91■□□□□ 0.3
COL4A1-204ENST00000543140 CAPN9O14815 690 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 GPR182O15218 404 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 PRPF4O43172 522 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 SEPT4O43236 478 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 ASMTLO95671 621 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 TAC1P20366 129 aa16.9■□□□□ 0.3
COL4A1-204ENST00000543140 HEATR6Q6AI08 1181 aaKnown RBP16.9■□□□□ 0.3
COL4A1-204ENST00000543140 PRPF39Q86UA1 669 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms