RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SLC5A9Q2M3M2 681 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PDPK2PQ6A1A2 396 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 RNF149Q8NC42 400 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 DTNBP1Q96EV8 351 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 MICAL2O94851 1124 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 OR6B1O95007 311 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PIGRP01833 764 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CDH5P33151 784 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ASPAP45381 313 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 SERPINB9P50453 376 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PLD5Q8N7P1 536 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 NAT14Q8WUY8 206 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 MPP4Q96JB8 637 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 FRMD8Q9BZ67 464 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 DHX33Q9H6R0 707 aaKnown RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 USP29Q9HBJ7 922 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PNPLA8Q9NP80 782 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 LTBP1Q14766 1721 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 INO80B-WBP1J3KQ70 363 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 DCXO43602 365 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 TBC1D12O60347 775 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PRKCBP05771 671 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 VAV1P15498 845 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 AOC1P19801 751 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PRKCHP24723 683 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ARL2P36404 184 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 GRIA1P42261 906 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 SESN2P58004 480 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 PTPN11Q06124 597 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 TBL3Q12788 808 aaKnown RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ARCQ7LC44 396 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ZBTB8OSQ8IWT0 167 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 ADGRF2Q8IZF7 708 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CMTM5Q96DZ9 223 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CNPY3Q9BT09 278 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 INO80BQ9C086 356 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-237ENST00000539504 MIS12Q9H081 205 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 C1orf21Q9H246 121 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 NRBP2Q9NSY0 501 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 CDH22Q9UJ99 828 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 DTNAQ9Y4J8 743 aa11.63□□□□□ -0.55
SYNE1-237ENST00000539504 SCN9AQ15858 1988 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CAPN8A6NHC0 703 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 BIRC5O15392 142 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SNNO75324 88 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ATP6V1B1P15313 513 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CPOXP36551 454 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 LRRC71Q8N4P6 559 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 FAM81AQ8TBF8 368 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ATXN7L3BQ96GX2 97 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SDCBP2Q9H190 292 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ADGRA2Q96PE1 1338 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 E9PBE3 544 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 KLHL41O60662 606 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ATXN3P54252 364 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CCNIQ14094 377 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 TAZQ16635 292 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 MAP3K21Q5TCX8 1036 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 DRAXINQ8NBI3 349 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 PIP4K2CQ8TBX8 421 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CDKL2Q92772 493 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 PPP1R36Q96LQ0 422 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 TWNKQ96RR1 684 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 EBNA1BP2Q99848 306 aaKnown RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CCDC28BQ9BUN5 200 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 LHX5Q9H2C1 402 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 OCEL1Q9H607 264 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 MAN1C1Q9NR34 630 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF277Q9NRM2 450 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 HMGXB4Q9UGU5 601 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SORCS3Q9UPU3 1222 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 POMPQ9Y244 141 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SLX4Q8IY92 1834 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 TPP1O14773 563 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF143P52747 638 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CHN2P52757 468 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SP2Q02086 613 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 GHRHRQ02643 423 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 FOLH1Q04609 750 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 DEUP1Q05D60 604 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SURF1Q15526 300 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 JADE3Q92613 823 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 CLMNQ96JQ2 1002 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 NLRP4Q96MN2 994 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 SLC4A7Q9Y6M7 1214 aa11.62□□□□□ -0.55
SYNE1-237ENST00000539504 WDR27A2RRH5 827 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 AIM2O14862 343 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 CFLARO15519 480 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 METTL18O95568 372 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 TYK2P29597 1187 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 ITGA9Q13797 1035 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 TEDDM1Q5T9Z0 273 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 C10orf107Q8IVU9 208 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 INPP5FQ9Y2H2 1132 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 NR2E3Q9Y5X4 410 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 LRRC37AA6NMS7 1700 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 SERPINE1P05121 402 aa11.61□□□□□ -0.55
SYNE1-237ENST00000539504 DESP17661 470 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms