RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 BAHD1Q8TBE0 780 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 PLEKHO2Q8TD55 490 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 IMPG2Q9BZV3 1241 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 MTMR12Q9C0I1 747 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 TRPC7Q9HCX4 862 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 RTN4Q9NQC3 1192 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 INTS13Q9NVM9 706 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 BCCIPQ9P287 314 aaKnown RBP eCLIP13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 DSEQ9UL01 958 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 ARHGAP26Q9UNA1 814 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 DERAQ9Y315 318 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 C2CD2Q9Y426 696 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 PCDHB5Q9Y5E4 795 aa13.21□□□□□ -0.29
CLSTN3-208ENST00000538933 IGHV1OR15-9A0A0B4J2B8 117 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 TCRBV21S2A2A0A5A6 115 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 LRRC10BA6NIK2 292 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 CYB561D2O14569 222 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 P4HA2O15460 535 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 KAT7O95251 611 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 ADCY5O95622 1261 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 CYP17A1P05093 508 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 GABRG2P18507 467 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF75DP51815 510 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PPP3CAQ08209 521 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 DDR2Q16832 855 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 MIIPQ5JXC2 388 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 EOGTQ5NDL2 527 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 SLC36A4Q6YBV0 504 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 C12orf40Q86WS4 652 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 THEM5Q8N1Q8 247 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PHTF2Q8N3S3 785 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF419Q96HQ0 510 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 NAP1L5Q96NT1 182 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PNKPQ96T60 521 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PI4K2AQ9BTU6 479 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PRORYQ9H606 182 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 CD248Q9HCU0 757 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 DPP3Q9NY33 737 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 HCN2Q9UL51 889 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 COL6A6A6NMZ7 2263 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 PTPN13Q12923 2485 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 TEX15Q9BXT5 2789 aa13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 MUC22E2RYF6 1773 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-208ENST00000538933 TEX33O43247 280 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 TPM1P09493 284 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 HDCP19113 662 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 CYP2F1P24903 491 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 EIF2DP41214 584 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 TNFRSF4P43489 277 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 WNT7BP56706 349 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 NR1I3Q14994 352 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 DHCR24Q15392 516 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 EXOC3L4Q17RC7 722 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 PLEKHG6Q3KR16 790 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 CBWD6Q4V339 395 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 CBWD3Q5JTY5 395 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 CBWD5Q5RIA9 395 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 RHBDF2Q6PJF5 856 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 DBX2Q6ZNG2 339 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 SV2AQ7L0J3 742 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF605Q86T29 641 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 DCP1BQ8IZD4 617 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 PGBD3Q8N328 593 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 LSM14AQ8ND56 463 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 FBXL13Q8NEE6 735 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 NEK11Q8NG66 645 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 OR5B17Q8NGF7 314 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 PKMYT1Q99640 499 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 CRACR2AQ9BSW2 395 aa13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 UXTQ9UBK9 157 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-208ENST00000538933 GTPBP10A4D1E9 387 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ITGB3P05106 788 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ATXN1LP0C7T5 689 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ITPKBP27987 946 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 GRIA2P42262 883 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 CLDN10P78369 228 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 GRIK2Q13002 908 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 NCOA4Q13772 614 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 SYCP1Q15431 976 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ZACNQ401N2 412 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 TDRD10Q5VZ19 366 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 APTXQ7Z2E3 356 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 TRAPPC11Q7Z392 1133 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 METTL23Q86XA0 190 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 KIAA1958Q8N8K9 716 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 SPATA18Q8TC71 538 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF516Q92618 1163 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 MRFAP1L1Q96HT8 127 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 HSPA12BQ96MM6 686 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ABCB6Q9NP58 842 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 CALCOCO1Q9P1Z2 691 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 ITGA11Q9UKX5 1188 aa13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 UBR5O95071 2799 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-208ENST00000538933 PTPRJQ12913 1337 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 A0A1W2PQF6 199 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 LEFTY2O00292 366 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 HLA-DRAP01903 254 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 C4BPAP04003 597 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 APODP05090 189 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 TRIM21P19474 475 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms