RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PTK7Q13308 1070 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SEMA5AQ13591 1074 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SETDB1Q15047 1291 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 LRRC14Q15048 493 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PDK1Q15118 436 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 MAPRE1Q15691 268 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 PKN2Q16513 984 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 DBN1Q16643 649 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 ARL13BQ3SXY8 428 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 INTS6LQ5JSJ4 861 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 SPDYAQ5MJ70 313 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SH3PXD2AQ5TCZ1 1133 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 TTC39BQ5VTQ0 682 aaPredicted RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 RNF43Q68DV7 783 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 NPNTQ6UXI9 565 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 DSTYKQ6XUX3 929 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 CYS1Q717R9 158 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 BNIPLQ7Z465 357 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PIGZQ86VD9 579 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SERINC5Q86VE9 423 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SLC26A11Q86WA9 606 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 METTL23Q86XA0 190 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 TRIM42Q8IWZ5 723 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 FUKQ8N0W3 1084 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 DEFB106AQ8N104 65 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 CYP4X1Q8N118 509 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SCML4Q8N228 414 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 GDAP1Q8TB36 358 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 DENND1AQ8TEH3 1009 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SLC44A1Q8WWI5 657 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 IRGQQ8WZA9 623 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 WNT8BQ93098 351 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 FAM149B1Q96BN6 582 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PGBD4Q96DM1 585 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PGAP3Q96FM1 320 aaPredicted RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 SMARCD1Q96GM5 515 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 APOPT1Q96IL0 206 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SPATA13Q96N96 652 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 OLFM3Q96PB7 478 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 CSPG4P5Q96PW8 444 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SLC2A13Q96QE2 648 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 KCTD15Q96SI1 283 aaPredicted RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 NPY6RQ99463 290 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SYT15Q9BQS2 421 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PITPNM3Q9BZ71 974 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 OSBPL7Q9BZF2 842 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SENP6Q9GZR1 1112 aaPredicted RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 IQCGQ9H095 443 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 TSPYL2Q9H2G4 693 aaPredicted RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 RRAGCQ9HB90 399 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 FGFR1OP2Q9NVK5 253 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 GPATCH2LQ9NWQ4 482 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 MKS1Q9NXB0 559 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 DDX43Q9NXZ2 648 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 ZC3H7BQ9UGR2 993 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 GJD2Q9UKL4 321 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 FZD10Q9ULW2 581 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 CHMP2BQ9UQN3 213 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 NME7Q9Y5B8 376 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 CDY2AQ9Y6F7 541 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 SQORQ9Y6N5 450 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 ZNF638Q14966 1978 aaKnown RBP6.87□□□□□ -1.31
USP28-206ENST00000538224 THSD7BQ9C0I4 1608 aa6.87□□□□□ -1.31
USP28-206ENST00000538224 PLXNA3P51805 1871 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TCRBV9S1A1TA0A576 114 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 ERI2A8K979 691 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 ANKRD65E5RJM6 399 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 AP3B1O00203 1094 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 EEF2KO00418 725 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 PTGESO14684 152 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CAPN9O14815 690 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SEPT4O43236 478 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 HNRNPCL1O60812 293 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 ZNF623O75123 536 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 AP1G2O75843 785 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 DGKIO75912 1065 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 KRT38O76015 456 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 ALDH1A1P00352 501 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 APRTP07741 180 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SNRPAP09012 282 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 TROVE2P10155 538 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP28-206ENST00000538224 KRT4P19013 534 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TAC1P20366 129 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 PRKCHP24723 683 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 LMO2P25791 158 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 TKTP29401 623 aaKnown RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 SSTR1P30872 391 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 CYP2C18P33260 490 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 HTR7P34969 479 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SERPINB6P35237 376 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 MLH1P40692 756 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 MAGEA3P43357 314 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SCTRP47872 440 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 HCAR3P49019 387 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 GLUD2P49448 558 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 DEUP1Q05D60 604 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 SOX4Q06945 474 aaPredicted RBP6.86□□□□□ -1.31
USP28-206ENST00000538224 ADCY1Q08828 1119 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 GRIK3Q13003 919 aa6.86□□□□□ -1.31
USP28-206ENST00000538224 DNAJC3Q13217 504 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms