RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CST5P28325 142 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CDC25CP30307 473 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CD52P31358 61 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 SDC4P31431 198 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 GBP2P32456 591 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 SCNN1AP37088 669 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 THPOP40225 353 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 CLCNKBP51801 687 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 ATXN1P54253 815 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 ADCY1Q08828 1119 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 MPP2Q14168 576 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 DSC3Q14574 896 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 BOLA3Q53S33 107 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 ANKRD42Q8N9B4 389 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 C3orf58Q8NDZ4 430 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 GDAP1Q8TB36 358 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 TEKT4Q8WW24 435 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 DYDC1Q8WWB3 177 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 SENP8Q96LD8 212 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 HSFY1Q96LI6 401 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 NGRNQ9NPE2 291 aaKnown RBP11.17□□□□□ -0.62
CLIP1-210ENST00000538120 PADI3Q9ULW8 664 aa11.17□□□□□ -0.62
CLIP1-210ENST00000538120 TMEM120BA0PK00 339 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 XPO1O14980 1071 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 GPR182O15218 404 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SKAP2O75563 359 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ANP32DO95626 131 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 OAS1P00973 400 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 RPL22P35268 128 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PTPN9P43378 593 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SNX16P57768 344 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 TRIM71Q2Q1W2 868 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SCYL2Q6P3W7 929 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 VSTM1Q6UX27 236 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ARCQ7LC44 396 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PIGZQ86VD9 579 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PQLC3Q8N755 202 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PXYLP1Q8TE99 480 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 NDRG1Q92597 394 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 TNIP3Q96KP6 325 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 RNF157Q96PX1 679 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PAAF1Q9BRP4 392 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SNRNP25Q9BV90 132 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 DUSP16Q9BY84 665 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 MAGEB5Q9BZ81 275 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 FOXP3Q9BZS1 431 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ROPN1BQ9BZX4 212 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ECT2Q9H8V3 914 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ROPN1Q9HAT0 212 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PCDH18Q9HCL0 1135 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SLC38A7Q9NVC3 462 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 GIT1Q9Y2X7 761 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 DNAH12Q6ZR08 3092 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 IFNB1P01574 187 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 THP07101 528 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 KRT16P08779 473 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 NQO1P15559 274 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ACADSBP45954 432 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 SCNN1GP51170 649 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 EIF3EP60228 445 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 LPIN1Q14693 890 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 NAA25Q14CX7 972 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 PDK2Q15119 407 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 NOMO1Q15155 1222 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 NUGGCQ68CJ6 796 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 MFSD5Q6N075 450 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 ARHGEF2Q92974 986 aaKnown RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 RBM15Q96T37 977 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 EBF2Q9HAK2 575 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 CRTAC1Q9NQ79 661 aa11.16□□□□□ -0.62
CLIP1-210ENST00000538120 USP15Q9Y4E8 981 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-210ENST00000538120 MDM4O15151 490 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 ZNF623O75123 536 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MAGEA4P43358 317 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 NRLP54845 237 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 SP3Q02447 781 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MORF4L2Q15014 288 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 FITM2Q8N6M3 262 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 PLD5Q8N7P1 536 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 SMC1BQ8NDV3 1235 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 PCDH19Q8TAB3 1148 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 C9orf72Q96LT7 481 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 TBCBQ99426 244 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 KCNK9Q9NPC2 374 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 TRMT13Q9NUP7 481 aaKnown RBP11.15□□□□□ -0.62
CLIP1-210ENST00000538120 STK38LQ9Y2H1 464 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 KIF1CO43896 1103 aaKnown RBP11.15□□□□□ -0.62
CLIP1-210ENST00000538120 TCEA3O75764 348 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 RBP3P10745 1247 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 GAD2Q05329 585 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 KRT81Q14533 505 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 GALNTL6Q49A17 601 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 MAP3K21Q5TCX8 1036 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 ANKRD22Q5VYY1 191 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 CD300LGQ6UXG3 332 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 CROCCP2Q86T23 111 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 CYP4X1Q8N118 509 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 FAM71DQ8N9W8 422 aa11.15□□□□□ -0.62
CLIP1-210ENST00000538120 SPATA18Q8TC71 538 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms