RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TEAD2Q15562 447 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 DDR2Q16832 855 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 INTS6LQ5JSJ4 861 aaKnown RBP12.49□□□□□ -0.41
CLIP1-208ENST00000537004 TANGO2Q6ICL3 276 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 GAREM2Q75VX8 874 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 ZNF771Q7L3S4 317 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-208ENST00000537004 SLC13A5Q86YT5 568 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-208ENST00000537004 DCP1BQ8IZD4 617 aaKnown RBP12.49□□□□□ -0.41
CLIP1-208ENST00000537004 WDTC1Q8N5D0 677 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 EIF1ADQ8N9N8 165 aaKnown RBP12.49□□□□□ -0.41
CLIP1-208ENST00000537004 SLC4A11Q8NBS3 891 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 SHKBP1Q8TBC3 707 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 WHAMMQ8TF30 809 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 PLA2G2FQ9BZM2 168 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 HMGXB4Q9UGU5 601 aa12.49□□□□□ -0.41
CLIP1-208ENST00000537004 ZNF318Q5VUA4 2279 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 POLR3GO15318 223 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 PHF2O75151 1096 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 GJB6O95452 261 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 STAU1O95793 577 aaKnown RBP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 FAM153BP0C7A2 387 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 HAPLN1P10915 354 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 LHX1P48742 406 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 EPHA5P54756 1037 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 DR1Q01658 176 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 ORC1Q13415 861 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 FAM153CQ494X1 144 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 HSP90B2PQ58FF3 399 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 FAM78AQ5JUQ0 283 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 DAB2IPQ5VWQ8 1189 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 DENND1BQ6P3S1 775 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 SIX5Q8N196 739 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 PRELID2Q8N945 189 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 PSMG2Q969U7 264 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 TWNKQ96RR1 684 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 ELOVL4Q9GZR5 314 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 DPEP3Q9H4B8 488 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 MED4Q9NPJ6 270 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 CRTAC1Q9NQ79 661 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 GDE1Q9NZC3 331 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 FAM153AQ9UHL3 310 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 PCDHB5Q9Y5E4 795 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 ZFP37Q9Y6Q3 630 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-208ENST00000537004 CACNA1HO95180 2353 aa12.48□□□□□ -0.41
CLIP1-208ENST00000537004 TCRBV5S1A1TA0A578 114 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TCRBV7S2A1N4TA0A589 114 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 KRBA1A5PL33 1030 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TUFMP49411 452 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 RPL7AP62424 266 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FAM193AP78312 1265 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 HLTFQ14527 1009 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 DNAJC24Q6P3W2 148 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 BMP8AQ7Z5Y6 402 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 ERICH1Q86X53 443 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 DDX42Q86XP3 938 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FBXL6Q8N531 539 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 OR6B3Q8NGW1 331 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 SPPL2BQ8TCT7 592 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 SEC14L1Q92503 715 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TMEM176AQ96HP8 235 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 SYT15Q9BQS2 421 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TRIM51Q9BSJ1 452 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 LHX5Q9H2C1 402 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FBXL21Q9UKT6 434 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 CA14Q9ULX7 337 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 UTP11Q9Y3A2 253 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TMEM191CA6NGB0 347 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 ZNF197O14709 1029 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 PSTPIP1O43586 416 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 SRFP11831 508 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FCARP24071 287 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 GABRR2P28476 465 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 PCSK1P29120 753 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 ECHS1P30084 290 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 CHRNA3P32297 505 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 MAN1A1P33908 653 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 GNL1P36915 607 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 VIPR2P41587 438 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 INCA1Q0VD86 236 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 DHX34Q14147 1143 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 KCTD19Q17RG1 926 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 DPH6Q7L8W6 267 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 TSEN2Q8NCE0 465 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FLCNQ8NFG4 579 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 NXPE3Q969Y0 559 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 MAGOHBQ96A72 148 aaKnown RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 C18orf8Q96DM3 657 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 ASB16Q96NS5 453 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 ATXN3LQ9H3M9 355 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 FAM124BQ9H5Z6 455 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-208ENST00000537004 IP6K2Q9UHH9 426 aa12.47□□□□□ -0.41
CLIP1-208ENST00000537004 GOLGA6BA6NDN3 693 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 DAPK3O43293 454 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 WARSP23381 471 aaKnown RBP12.46□□□□□ -0.41
CLIP1-208ENST00000537004 TAS2R40P59535 323 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 CYP4F8P98187 520 aa12.46□□□□□ -0.41
CLIP1-208ENST00000537004 PLD1Q13393 1074 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms