RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 LYSMD4Q5XG99 296 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 THADAQ6YHU6 1953 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 RABEPKQ7Z6M1 372 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 SCD5Q86SK9 330 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 PIGZQ86VD9 579 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 SPATA20Q8TB22 786 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 PIGKQ92643 395 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 IPO9Q96P70 1041 aaKnown RBP13.77□□□□□ -0.21
RTN3-207ENST00000536011 ARID3AQ99856 593 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 LSM14BQ9BX40 385 aaKnown RBP13.77□□□□□ -0.21
RTN3-207ENST00000536011 NUSAP1Q9BXS6 441 aaKnown RBP13.77□□□□□ -0.21
RTN3-207ENST00000536011 EPG5Q9HCE0 2579 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 TMEM9BQ9NQ34 198 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 RXFP3Q9NSD7 469 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 MARCH2Q9P0N8 246 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 EVLQ9UI08 416 aaPredicted RBP13.77□□□□□ -0.21
RTN3-207ENST00000536011 NUDT5Q9UKK9 219 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 KIAA1257Q9ULG3 409 aa13.77□□□□□ -0.21
RTN3-207ENST00000536011 PLXND1Q9Y4D7 1925 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 TM4SF5O14894 197 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 XPO1O14980 1071 aaKnown RBP13.76□□□□□ -0.21
RTN3-207ENST00000536011 ZBED1O96006 694 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 SETSIPP0DME0 302 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 CORO1AP31146 461 aaKnown RBP13.76□□□□□ -0.21
RTN3-207ENST00000536011 TKTL1P51854 596 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 ZNF132P52740 706 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 YWHAGP61981 247 aaKnown RBP eCLIP13.76□□□□□ -0.21
RTN3-207ENST00000536011 BST2Q10589 180 aaKnown RBP13.76□□□□□ -0.21
RTN3-207ENST00000536011 STARD3Q14849 445 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 GOLGA7BQ2TAP0 167 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 MAP7D1Q3KQU3 841 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 RAB41Q5JT25 222 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 EGFLAMQ63HQ2 1017 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 ANKRD40Q6AI12 368 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 SYT12Q8IV01 421 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 SIX6OS1Q8N1H7 587 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 ENGASEQ8NFI3 743 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 UCMAQ8WVF2 138 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 RLN3Q8WXF3 142 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 PLD4Q96BZ4 506 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 DHTKD1Q96HY7 919 aaPredicted RBP13.76□□□□□ -0.21
RTN3-207ENST00000536011 CEP63Q96MT8 703 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 GABRG3Q99928 467 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 LRRC4Q9HBW1 653 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 ZDHHC4Q9NPG8 344 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 TSPAN16Q9UKR8 245 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 SLC27A6Q9Y2P4 619 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 NUP205Q92621 2012 aa13.76□□□□□ -0.21
RTN3-207ENST00000536011 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 ANTXRLA6NF34 631 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 PENKP01210 267 aaPredicted RBP13.75□□□□□ -0.21
RTN3-207ENST00000536011 CD19P15391 556 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 GABRG2P18507 467 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 ZNF445P59923 1031 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 RPL6Q02878 288 aaKnown RBP13.75□□□□□ -0.21
RTN3-207ENST00000536011 PM20D1Q6GTS8 502 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 ELOA2Q8IYF1 753 aaPredicted RBP13.75□□□□□ -0.21
RTN3-207ENST00000536011 TMEFF1Q8IYR6 380 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 CEP76Q8TAP6 659 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 IPO4Q8TEX9 1081 aaKnown RBP13.75□□□□□ -0.21
RTN3-207ENST00000536011 RNF139Q8WU17 664 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 TATDN2Q93075 761 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 BHMTQ93088 406 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 SLC35C1Q96A29 364 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 CNTNAP3BQ96NU0 1288 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 CNTNAP3Q9BZ76 1288 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 CALCOCO1Q9P1Z2 691 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 ANGPTL2Q9UKU9 493 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 ABCA7Q8IZY2 2146 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 CHD8Q9HCK8 2581 aa13.75□□□□□ -0.21
RTN3-207ENST00000536011 A0A1W2PQF6 199 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 SLC12A8A0AV02 714 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 BICDL2A1A5D9 508 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 C4orf47A7E2U8 309 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 TRIM24O15164 1050 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 PMM2O15305 246 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 KCNK5O95279 499 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 HMBSP08397 361 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 PAEPP09466 180 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 VDRP11473 427 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 WASP42768 502 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 HARS2P49590 506 aaKnown RBP13.74□□□□□ -0.21
RTN3-207ENST00000536011 PDE4CQ08493 712 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 EIF4HQ15056 248 aaKnown RBP13.74□□□□□ -0.21
RTN3-207ENST00000536011 STILQ15468 1287 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 CCDC40Q4G0X9 1142 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 TRIM61Q5EBN2 209 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 FOXR2Q6PJQ5 311 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 TOGARAM2Q6ZUX3 1019 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 ARMCX6Q7L4S7 300 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 ANKS1BQ7Z6G8 1248 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 CPXM2Q8N436 756 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 NT5C1BQ96P26 610 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 SLC2A11Q9BYW1 496 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 ULBP1Q9BZM6 244 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 PLK2Q9NYY3 685 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 MBD1Q9UIS9 605 aaPredicted RBP13.74□□□□□ -0.21
RTN3-207ENST00000536011 FBXO10Q9UK96 956 aa13.74□□□□□ -0.21
RTN3-207ENST00000536011 AGO1Q9UL18 857 aaKnown RBP13.74□□□□□ -0.21
RTN3-207ENST00000536011 HBS1LQ9Y450 684 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms