RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FAM221BA6H8Z2 402 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 NDUFS2O75306 463 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 KLKB1P03952 638 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 KIAA1324Q6UXG2 1013 aaKnown RBP24.8■■□□□ 1.56
CPSF1-202ENST00000527827 CCDC186Q7Z3E2 898 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 RGL4Q8IZJ4 473 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 ZNF276Q8N554 614 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 CYP3A43Q9HB55 503 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 NAGPAQ9UK23 515 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 STON1Q9Y6Q2 735 aa24.8■■□□□ 1.56
CPSF1-202ENST00000527827 H0Y626 953 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 TRIM16O95361 564 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 PDIA4P13667 645 aaKnown RBP24.79■■□□□ 1.56
CPSF1-202ENST00000527827 TRIM21P19474 475 aaKnown RBP24.79■■□□□ 1.56
CPSF1-202ENST00000527827 VAMP7P51809 220 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 PLEKHG6Q3KR16 790 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 FUT11Q495W5 492 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 CHCHD4Q8N4Q1 142 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 CAMK1GQ96NX5 476 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 FAM124BQ9H5Z6 455 aaPredicted RBP24.79■■□□□ 1.56
CPSF1-202ENST00000527827 RCOR1Q9UKL0 485 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 FRMD4BQ9Y2L6 1034 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 SLC27A6Q9Y2P4 619 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 USP3Q9Y6I4 520 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 ATRXP46100 2492 aa24.79■■□□□ 1.56
CPSF1-202ENST00000527827 CILPO75339 1184 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 PENKP01210 267 aaPredicted RBP24.78■■□□□ 1.56
CPSF1-202ENST00000527827 MAOBP27338 520 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 PPP3CAQ08209 521 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 HNRNPDQ14103 355 aaKnown RBP24.78■■□□□ 1.56
CPSF1-202ENST00000527827 FYB2Q5VWT5 728 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 ATL3Q6DD88 541 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 RAB44Q7Z6P3 723 aaPredicted RBP24.78■■□□□ 1.56
CPSF1-202ENST00000527827 METTL3Q86U44 580 aaKnown RBP24.78■■□□□ 1.56
CPSF1-202ENST00000527827 TAS1R2Q8TE23 839 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 FOXJ1Q92949 421 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 DUSP16Q9BY84 665 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 SUSD2Q9UGT4 822 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 TRAF3IP3Q9Y228 551 aa24.78■■□□□ 1.56
CPSF1-202ENST00000527827 MAPK13O15264 365 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 SH3BP5O60239 455 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 TRIM49P0CI25 452 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 TRIM49CP0CI26 452 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 CD58P19256 250 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 CD6P30203 668 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 GCLMP48507 274 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 PSEN1P49768 467 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 MFAP3P55082 362 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 DNM1Q05193 864 aaKnown RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 SLC14A1Q13336 389 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 ENPP2Q13822 863 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 GEN1Q17RS7 908 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 SYCP2LQ5T4T6 812 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 PPP1R26Q5T8A7 1209 aaPredicted RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 TADA2BQ86TJ2 420 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 SNX21Q969T3 373 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 IMPG2Q9BZV3 1241 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 NIF3L1Q9GZT8 377 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 MKRN2Q9H000 416 aaKnown RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 WSB2Q9NYS7 404 aaPredicted RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 CLIC5Q9NZA1 410 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 USP36Q9P275 1121 aaKnown RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 THAP10Q9P2Z0 257 aaPredicted RBP24.77■■□□□ 1.56
CPSF1-202ENST00000527827 CKAP5Q14008 2032 aa24.77■■□□□ 1.56
CPSF1-202ENST00000527827 CALUO43852 315 aaPredicted RBP24.76■■□□□ 1.55
CPSF1-202ENST00000527827 RALAP11233 206 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 HOXB3P14651 431 aaPredicted RBP24.76■■□□□ 1.55
CPSF1-202ENST00000527827 RDXP35241 583 aaKnown RBP24.76■■□□□ 1.55
CPSF1-202ENST00000527827 IL12RB1P42701 662 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 PKP1Q13835 747 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 ZNF423Q2M1K9 1284 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 WDR45BQ5MNZ6 344 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 PRDM16Q9HAZ2 1276 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 ITM2CQ9NQX7 267 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 CFAP45Q9UL16 551 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 ZNF510Q9Y2H8 683 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 DSPP15924 2871 aaKnown RBP24.76■■□□□ 1.55
CPSF1-202ENST00000527827 BAHCC1Q9P281 2608 aa24.76■■□□□ 1.55
CPSF1-202ENST00000527827 A0A1B0GVL5 298 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 KIF20AO95235 890 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 CAPNS1P04632 268 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 GNSP15586 552 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 GRIK2Q13002 908 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 STARD3Q14849 445 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 TRIP6Q15654 476 aaKnown RBP24.75■■□□□ 1.55
CPSF1-202ENST00000527827 DNASE2BQ8WZ79 361 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 TOE1Q96GM8 510 aaKnown RBP24.75■■□□□ 1.55
CPSF1-202ENST00000527827 PIWIL1Q96J94 861 aaKnown RBP24.75■■□□□ 1.55
CPSF1-202ENST00000527827 RASAL2Q9UJF2 1139 aa24.75■■□□□ 1.55
CPSF1-202ENST00000527827 KCNJ18B7U540 433 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 TAF4O00268 1085 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 NPC1O15118 1278 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 HMBSP08397 361 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 PFKFB1P16118 471 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 CORO1AP31146 461 aaKnown RBP24.74■■□□□ 1.55
CPSF1-202ENST00000527827 CHKAP35790 457 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 ZNF132P52740 706 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 COG7P83436 770 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 EFEMP1Q12805 493 aa24.74■■□□□ 1.55
CPSF1-202ENST00000527827 NFIL3Q16649 462 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms