RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 KLRF2D3W0D1 207 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 TRDMT1O14717 391 aaKnown RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 TBCAO75347 108 aaKnown RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 ENDOD1O94919 500 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 GCNT3O95395 438 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 NTRK1P04629 796 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 CDH5P33151 784 aaPredicted RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 ENTPD1P49961 510 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 IFITM2Q01629 132 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PDIA2Q13087 525 aaKnown RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 RARS2Q5T160 578 aaKnown RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 POLNQ7Z5Q5 900 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 MCOLN2Q8IZK6 566 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF444Q8N0Y2 327 aaPredicted RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PPP4R1Q8TF05 950 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PLEKHA8Q96JA3 519 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 FAM20AQ96MK3 541 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 SLITRK1Q96PX8 696 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PAFAH2Q99487 392 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 BTBD2Q9BX70 525 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 LIN28AQ9H9Z2 209 aaKnown RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 MARCOQ9UEW3 520 aaPredicted RBP8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PCDHA12Q9UN75 941 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 SLC8A2Q9UPR5 921 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 CLEC11AQ9Y240 323 aa8.66□□□□□ -1.02
CSMD1-213ENST00000523488 PNMA6FA0A0J9YX94 578 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TCRBV3S1A0A5B6 114 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 KDM1AO60341 852 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ALDH1A2O94788 518 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TFPTP0C1Z6 253 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TSPY3P0CV98 308 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TSPY8P0CW00 308 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 BGNP21810 368 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 NMT1P30419 496 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ADCY7P51828 1080 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TMPRSS15P98073 1019 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 CHRNEQ04844 493 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 FAM98CQ17RN3 349 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 PARP10Q53GL7 1025 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 KRT39Q6A163 491 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ANKRD26P1Q6NSI1 321 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 LACC1Q8IV20 430 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ARID3BQ8IVW6 561 aaPredicted RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 CENPSQ8N2Z9 138 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ACMSDQ8TDX5 336 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 CELF1Q92879 486 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 DCUN1D5Q9BTE7 237 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 OSBPL11Q9BXB4 747 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 C12orf65Q9H3J6 166 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 AKIP1Q9NQ31 210 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 PARVAQ9NVD7 372 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TRNAU1APQ9NX07 287 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 TMEM260Q9NX78 707 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 DYNC1LI2O43237 492 aaPredicted RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 IDH3BO43837 385 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 BPGMP07738 259 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 WEE2P0C1S8 567 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 PABPC1P11940 636 aaKnown RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 NAT1P18440 290 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 CDH3P22223 829 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 HMOX2P30519 316 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 RXRGP48443 463 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 GHRHRQ02643 423 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 GCNT1Q02742 428 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 PSMD6Q15008 389 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 ITIH5Q86UX2 942 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 GALNT4Q8N4A0 578 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 CPT1BQ92523 772 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 SLC5A5Q92911 643 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 NPLQ9BXD5 320 aaPredicted RBP8.65□□□□□ -1.02
CSMD1-213ENST00000523488 HOMER2Q9NSB8 354 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 EMCNQ9ULC0 261 aa8.65□□□□□ -1.02
CSMD1-213ENST00000523488 POLR2MP0CAP2 368 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 STT3AP46977 705 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 C21orf59P57076 290 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 SLC25A3Q00325 362 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 MSS51Q4VC12 460 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 TEDDM1Q5T9Z0 273 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 INTS11Q5TA45 600 aaKnown RBP8.65□□□□□ -1.03
CSMD1-213ENST00000523488 GTF2IRD2BQ6EKJ0 949 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 ITPRIPL1Q6GPH6 555 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 PRR23CQ6ZRP0 262 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 ENOSF1Q7L5Y1 443 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 GTF2IRD2Q86UP8 949 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 PALM2Q8IXS6 379 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 FIBCD1Q8N539 461 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 GLIS1Q8NBF1 620 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 TFAP2CQ92754 450 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 ACAP3Q96P50 834 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 SRPK1Q96SB4 655 aaKnown RBP8.65□□□□□ -1.03
CSMD1-213ENST00000523488 CDH19Q9H159 772 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 RBMX2Q9Y388 322 aaKnown RBP8.65□□□□□ -1.03
CSMD1-213ENST00000523488 SPO11Q9Y5K1 396 aa8.65□□□□□ -1.03
CSMD1-213ENST00000523488 IGLV3-22A0A075B6J6 115 aa8.64□□□□□ -1.03
CSMD1-213ENST00000523488 LOC105371267A0A1B0GV96 52 aa8.64□□□□□ -1.03
CSMD1-213ENST00000523488 PRR5-ARHGAP8B1AHC4 643 aa8.64□□□□□ -1.03
CSMD1-213ENST00000523488 TNFRSF10AO00220 468 aa8.64□□□□□ -1.03
CSMD1-213ENST00000523488 KMOO15229 486 aa8.64□□□□□ -1.03
CSMD1-213ENST00000523488 OXSR1O95747 527 aaPredicted RBP8.64□□□□□ -1.03
CSMD1-213ENST00000523488 TOP3BO95985 862 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms