RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GLI1P08151 1106 aa16■□□□□ 0.15
LSM1-203ENST00000520755 MBL2P11226 248 aaPredicted RBP16■□□□□ 0.15
LSM1-203ENST00000520755 KRT3P12035 628 aa16■□□□□ 0.15
LSM1-203ENST00000520755 PFKLP17858 780 aa16■□□□□ 0.15
LSM1-203ENST00000520755 RFC1P35251 1148 aaPredicted RBP16■□□□□ 0.15
LSM1-203ENST00000520755 TUBP50607 506 aa16■□□□□ 0.15
LSM1-203ENST00000520755 EFHC1Q5JVL4 640 aa16■□□□□ 0.15
LSM1-203ENST00000520755 C10orf120Q5SQS8 335 aa16■□□□□ 0.15
LSM1-203ENST00000520755 SYPL2Q5VXT5 272 aa16■□□□□ 0.15
LSM1-203ENST00000520755 BSPRYQ5W0U4 402 aa16■□□□□ 0.15
LSM1-203ENST00000520755 RSRC2Q7L4I2 434 aaKnown RBP16■□□□□ 0.15
LSM1-203ENST00000520755 RNF135Q8IUD6 432 aa16■□□□□ 0.15
LSM1-203ENST00000520755 CCAR2Q8N163 923 aaKnown RBP16■□□□□ 0.15
LSM1-203ENST00000520755 SLC35G2Q8TBE7 412 aa16■□□□□ 0.15
LSM1-203ENST00000520755 EDEM1Q92611 657 aa16■□□□□ 0.15
LSM1-203ENST00000520755 USP13Q92995 863 aaPredicted RBP16■□□□□ 0.15
LSM1-203ENST00000520755 FAM149B1Q96BN6 582 aa16■□□□□ 0.15
LSM1-203ENST00000520755 RSPRY1Q96DX4 576 aa16■□□□□ 0.15
LSM1-203ENST00000520755 BTBD6Q96KE9 485 aa16■□□□□ 0.15
LSM1-203ENST00000520755 RPP25Q9BUL9 199 aaKnown RBP16■□□□□ 0.15
LSM1-203ENST00000520755 TDP1Q9NUW8 608 aa16■□□□□ 0.15
LSM1-203ENST00000520755 SMPD4Q9NXE4 827 aa16■□□□□ 0.15
LSM1-203ENST00000520755 UVRAGQ9P2Y5 699 aa16■□□□□ 0.15
LSM1-203ENST00000520755 CCL26Q9Y258 94 aa16■□□□□ 0.15
LSM1-203ENST00000520755 VCANP13611 3396 aa16■□□□□ 0.15
LSM1-203ENST00000520755 TMEM191CA6NGB0 347 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 HEPACAM2A8MVW5 462 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 ECI2O75521 394 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 OLFM2O95897 454 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 TFE3P19532 575 aaPredicted RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 ATP5C1P36542 298 aaKnown RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 HADHBP55084 474 aaKnown RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 YWHAZP63104 245 aaKnown RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 ARCQ7LC44 396 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 TADA2BQ86TJ2 420 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 CPNE8Q86YQ8 564 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 RHOT2Q8IXI1 618 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 DEFB106AQ8N104 65 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 CELF5Q8N6W0 485 aaKnown RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 ELSPBP1Q96BH3 223 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 TRIM44Q96DX7 344 aaPredicted RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 PLA2G2FQ9BZM2 168 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 TRPV4Q9HBA0 871 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 POPDC2Q9HBU9 364 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 KCND1Q9NSA2 647 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 ABCC13Q9NSE7 274 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 TRMT1Q9NXH9 659 aaKnown RBP15.99■□□□□ 0.15
LSM1-203ENST00000520755 CALCOCO1Q9P1Z2 691 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 CTTNBP2NLQ9P2B4 639 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 IGSF9Q9P2J2 1179 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 RASAL2Q9UJF2 1139 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 ANAPC7Q9UJX3 599 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 NAALADL1Q9UQQ1 740 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 CPQQ9Y646 472 aa15.99■□□□□ 0.15
LSM1-203ENST00000520755 BUB1O43683 1085 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 WEE1P30291 646 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 RNASE9P60153 205 aaKnown RBP15.98■□□□□ 0.15
LSM1-203ENST00000520755 SLC7A9P82251 487 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 EFEMP1Q12805 493 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 KIF5AQ12840 1032 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 GRM2Q14416 872 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 RAB6CQ53S08 254 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 MSANTD2Q6P1R3 559 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 VITQ6UXI7 678 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 BEND5Q7L4P6 421 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 BNIPLQ7Z465 357 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 MIB1Q86YT6 1006 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 RNF139Q8WU17 664 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 RXFP2Q8WXD0 754 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 NXPE3Q969Y0 559 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 E2F7Q96AV8 911 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 CFAP57Q96MR6 1250 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 CDK5RAP1Q96SZ6 601 aaKnown RBP15.98■□□□□ 0.15
LSM1-203ENST00000520755 RAB6CQ9H0N0 254 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 MRPL47Q9HD33 250 aaKnown RBP15.98■□□□□ 0.15
LSM1-203ENST00000520755 LZTFL1Q9NQ48 299 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 DNMT3LQ9UJW3 386 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 ARHGAP26Q9UNA1 814 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 CAPN6Q9Y6Q1 641 aa15.98■□□□□ 0.15
LSM1-203ENST00000520755 MACROD2A1Z1Q3 448 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 CAPN9O14815 690 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 CCP110O43303 1012 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 MOCS3O95396 460 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 IGLV3-25P01717 112 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 IRF1P10914 325 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 NCAM1P13591 858 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 GPD1P21695 349 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 MATKP42679 507 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 ZXDBP98169 803 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 TDGQ13569 410 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 C15orf59Q2T9L4 293 aaPredicted RBP15.97■□□□□ 0.15
LSM1-203ENST00000520755 CCDC14Q49A88 953 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 DCUN1D2Q6PH85 259 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 KLHDC10Q6PID8 442 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 TAC4Q86UU9 113 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 YAF2Q8IY57 180 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 ZNF276Q8N554 614 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 TPCN2Q8NHX9 752 aa15.97■□□□□ 0.15
LSM1-203ENST00000520755 DQX1Q8TE96 717 aaKnown RBP15.97■□□□□ 0.15
LSM1-203ENST00000520755 SH3RF2Q8TEC5 729 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms