RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 FLNBO75369 2602 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 CYP26A1O43174 497 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 SYNCRIPO60506 623 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 OXTRP30559 389 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 ATICP31939 592 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 GOLGA4Q13439 2230 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 KIF19Q2TAC6 998 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 GALNT15Q8N3T1 639 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 C1orf216Q8TAB5 229 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 PIP4K2CQ8TBX8 421 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 PRCCQ92733 491 aaPredicted RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 TNIP3Q96KP6 325 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 HELZ2Q9BYK8 2649 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 FBXO44Q9H4M3 255 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 THAP10Q9P2Z0 257 aaPredicted RBP21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 PCDHGB2Q9Y5G2 931 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 SNX11Q9Y5W9 270 aa21.42■■□□□ 1.02
SQSTM1-215ENST00000514093 A0A087WV48 116 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 MFAP3P55082 362 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 ZNF699Q32M78 642 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 Q6ZNB5 142 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 SCUBE3Q8IX30 993 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 NELFCDQ8IXH7 590 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 C12orf29Q8N999 325 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 XXYLT1Q8NBI6 393 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 ZNF507Q8TCN5 953 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 NUP58Q9BVL2 599 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 CYLDQ9NQC7 956 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 FAM49BQ9NUQ9 324 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 HMGXB4Q9UGU5 601 aa21.41■■□□□ 1.02
SQSTM1-215ENST00000514093 A0A1W2PQH9 124 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 NEFLP07196 543 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 ACADMP11310 421 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 RARGP13631 454 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 ACO1P21399 889 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 COPAP53621 1224 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 BIRC3Q13489 604 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 ZNF234Q14588 700 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 SUZ12Q15022 739 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 ZNF667Q5HYK9 610 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 DHRS13Q6UX07 377 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 LAYNQ6UX15 382 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 EPM2AIP1Q7L775 607 aaPredicted RBP21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 PLEKHO2Q8TD55 490 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 SORCS1Q8WY21 1168 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 CSNK1G1Q9HCP0 422 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 SLC27A6Q9Y2P4 619 aa21.4■■□□□ 1.02
SQSTM1-215ENST00000514093 KLKB1P03952 638 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 PRKCHP24723 683 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 ADORA2BP29275 332 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 PLA2G4AP47712 749 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 C19orf57Q0VDD7 668 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 ENPP2Q13822 863 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 C10orf120Q5SQS8 335 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 FYB2Q5VWT5 728 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 PDCD7Q8N8D1 485 aaKnown RBP21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 C6orf106Q9H6K1 298 aaPredicted RBP21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 DNMT3LQ9UJW3 386 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 CLEC4EQ9ULY5 219 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 SCML2Q9UQR0 700 aa21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.39■■□□□ 1.01
SQSTM1-215ENST00000514093 KNL1Q8NG31 2342 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 EIF3DO15371 548 aaKnown RBP eCLIP21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 TNFSF14O43557 240 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 STC2O76061 302 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 EPHX1P07099 455 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 ITPKBP27987 946 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 ABCG1P45844 678 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 AFF3P51826 1226 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 NDST1P52848 882 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 SMAD1Q15797 465 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 UCMAQ8WVF2 138 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 VRTNQ9H8Y1 702 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 ANKRD6Q9Y2G4 727 aa21.38■■□□□ 1.01
SQSTM1-215ENST00000514093 PLK4O00444 970 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 C1QL1O75973 258 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 PENKP01210 267 aaPredicted RBP21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 IGLV3-19P01714 112 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 HMBSP08397 361 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 ACSL1P33121 698 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 ZNF132P52740 706 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 CLDN6P56747 220 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 ASIC1P78348 528 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 IL9RQ01113 521 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 NCOA4Q13772 614 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 PTPRNQ16849 979 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 SLC39A7Q92504 469 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 UBL7Q96S82 380 aaPredicted RBP21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 CIPCQ9C0C6 399 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 ELOVL2Q9NXB9 296 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 MYH10P35580 1976 aa21.37■■□□□ 1.01
SQSTM1-215ENST00000514093 SHROOM3Q8TF72 1996 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 HHLA1C9JL84 531 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 NPC1O15118 1278 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 VNN1O95497 513 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 FAM200BP0CF97 657 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 HLA-EP13747 358 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 BMT2Q1RMZ1 405 aa21.36■■□□□ 1.01
SQSTM1-215ENST00000514093 C8orf34Q49A92 452 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms