RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 VPS18Q9P253 973 aa8.7□□□□□ -1.02
RNF4-220ENST00000513578 FBXW11Q9UKB1 542 aa8.7□□□□□ -1.02
RNF4-220ENST00000513578 ADAM21Q9UKJ8 722 aa8.7□□□□□ -1.02
RNF4-220ENST00000513578 ADAM28Q9UKQ2 775 aa8.7□□□□□ -1.02
RNF4-220ENST00000513578 FARP1Q9Y4F1 1045 aaPredicted RBP8.7□□□□□ -1.02
RNF4-220ENST00000513578 RAD54BQ9Y620 910 aa8.7□□□□□ -1.02
RNF4-220ENST00000513578 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 FAM92AA1XBS5 289 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CARNS1A5YM72 827 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 GOLGA6L10A6NI86 522 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 HACD1B0YJ81 288 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 H3BRJ5 948 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 M0QYT0 321 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 SGK1O00141 431 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 POLR3GO15318 223 aaPredicted RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 TBC1D4O60343 1298 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TADA2AO75478 443 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TTC4O95801 387 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 MYZAPP0CAP1 466 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TSHRP16473 764 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 BDNFP23560 247 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CYP2F1P24903 491 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 HTR7P34969 479 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 RPL22P35268 128 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 ADRA1BP35368 520 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 ARL4AP40617 200 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 MAGEA6P43360 314 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 OR1G1P47890 313 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CXCR3P49682 368 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 DYNLT1P63172 113 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 ROR1Q01973 937 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 DEUP1Q05D60 604 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 GPS1Q13098 491 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 SEMA3BQ13214 749 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 PAFAH1B3Q15102 231 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 ARL13BQ3SXY8 428 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 PAN2Q504Q3 1202 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 TNFAIP8L3Q5GJ75 292 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CEP85LQ5SZL2 805 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 C6orf118Q5T5N4 469 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 SYPL2Q5VXT5 272 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CNKSR3Q6P9H4 555 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 HFE2Q6ZVN8 426 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 GPRIN1Q7Z2K8 1008 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CDKL3Q8IVW4 592 aaPredicted RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 PPIL6Q8IXY8 311 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CCDC185Q8N715 623 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 NAT8LQ8N9F0 302 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 GLIS1Q8NBF1 620 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 FAM76AQ8TAV0 307 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 C2orf15Q8WU43 125 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 RSAD2Q8WXG1 361 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TTC25Q96NG3 672 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CSPG4P5Q96PW8 444 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 FAM118BQ9BPY3 351 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TMEM121Q9BTD3 319 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CDC42EP4Q9H3Q1 356 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 HIPK3Q9H422 1215 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 DHX35Q9H5Z1 703 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 FAM204AQ9H8W3 233 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 WDR6Q9NNW5 1121 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 ABCC13Q9NSE7 274 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 GPATCH2LQ9NWQ4 482 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 MARCH5Q9NX47 278 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 CWC15Q9P013 229 aaKnown RBP8.69□□□□□ -1.02
RNF4-220ENST00000513578 CALCOCO1Q9P1Z2 691 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 DNAJB4Q9UDY4 337 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 TBX21Q9UL17 535 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 LRFN2Q9ULH4 789 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 NAALADL1Q9UQQ1 740 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 COL4A6Q14031 1691 aa8.69□□□□□ -1.02
RNF4-220ENST00000513578 SRRM3A6NNA2 597 aaPredicted RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 E7ESA3 106 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 H7C4K7 107 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 CAPN9O14815 690 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 TRIM66O15016 1216 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 ALOX15BO15296 676 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 PQBP1O60828 265 aaKnown RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 GCATO75600 419 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 DGKIO75912 1065 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 GALTP07902 379 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 USP17L7P0C7H9 530 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 CHKAP35790 457 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 SLC11A1P49279 550 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 ATXN1P54253 815 aaKnown RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 TLE2Q04725 743 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 DPYSQ14117 519 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 SLC29A2Q14542 456 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 TRIP13Q15645 432 aaPredicted RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 TCTN1Q2MV58 587 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 SLC45A4Q5BKX6 768 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 EFHC2Q5JST6 749 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 BRMS1LQ5PSV4 323 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 VARS2Q5ST30 1063 aaKnown RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 BSPRYQ5W0U4 402 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 NCBP2-AS2Q69YL0 99 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 ZNF280DQ6N043 979 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 MFSD5Q6N075 450 aa8.68□□□□□ -1.02
RNF4-220ENST00000513578 DARS2Q6PI48 645 aaKnown RBP8.68□□□□□ -1.02
RNF4-220ENST00000513578 KDM7AQ6ZMT4 941 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms