RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 E7ENQ6 273 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 STK25O00506 426 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 ZIC2O95409 532 aaPredicted RBP10.5□□□□□ -0.73
NUP54-203ENST00000504173 CALB1P05937 261 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 DCNP07585 359 aaKnown RBP10.5□□□□□ -0.73
NUP54-203ENST00000504173 ZDHHC11BP0C7U3 371 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 C1QTNF9P0C862 333 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 RALAP11233 206 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 GZMAP12544 262 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 MMP8P22894 467 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 GABRB2P47870 512 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 PGFP49763 221 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 C2CD6Q53TS8 623 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 STXBP5Q5T5C0 1151 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 SNX30Q5VWJ9 437 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 BTBD8Q5XKL5 378 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 TXNDC8Q6A555 127 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 MON1BQ7L1V2 547 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 BHLHA9Q7RTU4 235 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 SCD5Q86SK9 330 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 ZDHHC17Q8IUH5 632 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 MAB21L3Q8N8X9 362 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 FAM149B1Q96BN6 582 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 ACSF2Q96CM8 615 aaPredicted RBP10.5□□□□□ -0.73
NUP54-203ENST00000504173 CCDC42Q96M95 316 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 NACA2Q9H009 215 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 TASP1Q9H6P5 420 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 KCNK12Q9HB15 430 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 GDE1Q9NZC3 331 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 IGSF9Q9P2J2 1179 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 ZMYM5Q9UJ78 669 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 CDH7Q9ULB5 785 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 STRIP2Q9ULQ0 834 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 SIT1Q9Y3P8 196 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 DMXL2Q8TDJ6 3036 aa10.5□□□□□ -0.73
NUP54-203ENST00000504173 OBSL1O75147 1896 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 A0A087X0T9 212 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 C2orf78A6NCI8 922 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 GOLGA8SH3BPF8 625 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 TLR5O60602 858 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 RTN2O75298 545 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 LTFP02788 710 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 CKMP06732 381 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 FAM228BP0C875 321 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 RARGP13631 454 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 PFKLP17858 780 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 HDCP19113 662 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 AVPR1AP37288 418 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 TUBP50607 506 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 SLC6A3Q01959 620 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 GFPT1Q06210 699 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 PTP4A2Q12974 167 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 SLC18A3Q16572 532 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 EFHC1Q5JVL4 640 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 C10orf120Q5SQS8 335 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 CCDC122Q5T0U0 273 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 HECTD3Q5T447 861 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 FAM102AQ5T9C2 384 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 BSPRYQ5W0U4 402 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 ALKBH5Q6P6C2 394 aaKnown RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 OLFML1Q6UWY5 402 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 RSRC2Q7L4I2 434 aaKnown RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 PHLDB2Q86SQ0 1253 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 TADA2BQ86TJ2 420 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 XYLT1Q86Y38 959 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 TMTC1Q8IUR5 882 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 MCOLN2Q8IZK6 566 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 ARL14EPQ8N8R7 260 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 ZSCAN18Q8TBC5 510 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 ATRIPQ8WXE1 791 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 TRIM11Q96F44 468 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 PIWIL1Q96J94 861 aaKnown RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 CDK5RAP1Q96SZ6 601 aaKnown RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 BAG1Q99933 345 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 TRIM62Q9BVG3 475 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 CCSER2Q9H7U1 834 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 ABCC13Q9NSE7 274 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.49□□□□□ -0.73
NUP54-203ENST00000504173 OSER1Q9NX31 292 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 ZSCAN32Q9NX65 697 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 CLIC5Q9NZA1 410 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 WDR35Q9P2L0 1181 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 GMEB2Q9UKD1 530 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 ZFP37Q9Y6Q3 630 aaPredicted RBP10.49□□□□□ -0.73
NUP54-203ENST00000504173 LOC400499M0QZD8 3231 aa10.49□□□□□ -0.73
NUP54-203ENST00000504173 DENND4CQ5VZ89 1909 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.48□□□□□ -0.73
NUP54-203ENST00000504173 SRRM3A6NNA2 597 aaPredicted RBP10.48□□□□□ -0.73
NUP54-203ENST00000504173 CAPN9O14815 690 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 COCHO43405 550 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 HSF2BPO75031 334 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 GRAP2O75791 330 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 OAS1P00973 400 aaKnown RBP10.48□□□□□ -0.73
NUP54-203ENST00000504173 FTLP02792 175 aaPredicted RBP10.48□□□□□ -0.73
NUP54-203ENST00000504173 GLI1P08151 1106 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 MBL2P11226 248 aaPredicted RBP10.48□□□□□ -0.73
NUP54-203ENST00000504173 LAMP2P13473 410 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 NCAM1P13591 858 aa10.48□□□□□ -0.73
NUP54-203ENST00000504173 GLULP15104 373 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms