RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PARP9Q8IXQ6 854 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 MZB1Q8WU39 189 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 SOCS4Q8WXH5 440 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 KCTD13Q8WZ19 329 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 MTBPQ96DY7 904 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 APOPT1Q96IL0 206 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 HNRNPABQ99729 332 aaKnown RBP12.42□□□□□ -0.42
NUP54-202ENST00000502850 APOL6Q9BWW8 343 aa12.42□□□□□ -0.42
NUP54-202ENST00000502850 FOXO6A8MYZ6 492 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 H3BRJ5 948 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 HNRNPCL1O60812 293 aaKnown RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 BANF1O75531 89 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 FBXO21O94952 628 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ZNF865P0CJ78 1059 aaPredicted RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 LCP1P13796 627 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 CCDC130P13994 396 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 AKAP5P24588 427 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 SLC8A1P32418 973 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 RGS2P41220 211 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ADCY1Q08828 1119 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ARHGEF6Q15052 776 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 FAM133BQ5BKY9 247 aaKnown RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 LRRC6Q86X45 466 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 CHSY1Q86X52 802 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 TRIM42Q8IWZ5 723 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 BANPQ8N9N5 519 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 B3GALNT2Q8NCR0 500 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 SLC2A14Q8TDB8 520 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 WDR83Q9BRX9 315 aaKnown RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 DUSP16Q9BY84 665 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 IQCGQ9H095 443 aaKnown RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 DPEP3Q9H4B8 488 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ECT2Q9H8V3 914 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 KIF9Q9HAQ2 790 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 TMEM51Q9NW97 253 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 GPATCH2LQ9NWQ4 482 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ZC3H7BQ9UGR2 993 aaKnown RBP12.41□□□□□ -0.42
NUP54-202ENST00000502850 HES2Q9Y543 173 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 IPPQ9Y573 584 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 NME7Q9Y5B8 376 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 RAD54BQ9Y620 910 aa12.41□□□□□ -0.42
NUP54-202ENST00000502850 ADCY6O43306 1168 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 LPXNO60711 386 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 KRT38O76015 456 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 APRTP07741 180 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 MYL3P08590 195 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 MLNP12872 115 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 NPR3P17342 541 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 PRKCHP24723 683 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 CNTFP26441 200 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 NOS2P35228 1153 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SULT1E1P49888 294 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SERPINB9P50453 376 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 MNAT1P51948 309 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 ZNF135P52742 658 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 GAD2Q05329 585 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SLC18A2Q05940 514 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 DNAJC3Q13217 504 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 RIPK1Q13546 671 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SEMA5AQ13591 1074 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 EFTUD2Q15029 972 aaKnown RBP eCLIP12.4□□□□□ -0.42
NUP54-202ENST00000502850 UBXN11Q5T124 520 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 FAM47EQ6ZV65 393 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 PDZD4Q76G19 769 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 RSPH3Q86UC2 560 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 CCNJLQ8IV13 435 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SIX6OS1Q8N1H7 587 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 TMEM86AQ8N2M4 240 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 TFB1MQ8WVM0 346 aaKnown RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 MRRFQ96E11 262 aaKnown RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 CSPG4P5Q96PW8 444 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 RAB3IPQ96QF0 476 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 CDHR5Q9HBB8 845 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 POPDC2Q9HBU9 364 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 LRRC4Q9HBW1 653 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 EIF2B3Q9NR50 452 aaKnown RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 MKS1Q9NXB0 559 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 A0A1W2PPM1 405 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 PPP1R12AO14974 1030 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 MGRN1O60291 552 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 IL1BP01584 269 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SNRPAP09012 282 aaKnown RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 PDGFRBP09619 1106 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 FGFR1P11362 822 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 CCNB1P14635 433 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 HOXC8P31273 242 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 MAGEA3P43357 314 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 RASSF2P50749 326 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 LILRA4P59901 499 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 NCALDP61601 193 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 NAB1Q13506 487 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 SLC1A5Q15758 541 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 CA9Q16790 459 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 KBTBD12Q3ZCT8 623 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 TWF2Q6IBS0 349 aaKnown RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 CGB2Q6NT52 195 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 CYS1Q717R9 158 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 GSDMBQ8TAX9 411 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 ZNF75CPQ92670 426 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 CFAP36Q96G28 342 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms