RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ZNF513Q8N8E2 541 aaPredicted RBP16.46■□□□□ 0.23
HDAC4-213ENST00000496347 NAT16Q8N8M0 369 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 TXNDC5Q8NBS9 432 aaKnown RBP16.46■□□□□ 0.23
HDAC4-213ENST00000496347 MDGA1Q8NFP4 955 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 UBA3Q8TBC4 463 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 RNF139Q8WU17 664 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 SLC35F5Q8WV83 523 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 IRGQQ8WZA9 623 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 HSFY1Q96LI6 401 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 ZSWIM1Q9BR11 485 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 NUP62CLQ9H1M0 184 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 DLL3Q9NYJ7 618 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 DACH1Q9UI36 760 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 STARD13Q9Y3M8 1113 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 HBS1LQ9Y450 684 aaKnown RBP16.46■□□□□ 0.23
HDAC4-213ENST00000496347 PCDHGA5Q9Y5G8 931 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 CNOT1A5YKK6 2376 aaKnown RBP16.45■□□□□ 0.22
HDAC4-213ENST00000496347 YJEFN3A6XGL0 299 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 E7ENQ6 273 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 SGK1O00141 431 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 ADAM23O75077 832 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 FBXO21O94952 628 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 KLKB1P03952 638 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 TIE1P35590 1138 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 DAOAP59103 153 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 ZNF445P59923 1031 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 PUM1Q14671 1186 aaKnown RBP eCLIP16.45■□□□□ 0.22
HDAC4-213ENST00000496347 BSPRYQ5W0U4 402 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 MSANTD2Q6P1R3 559 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 TPGS1Q6ZTW0 290 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 KBTBD6Q86V97 674 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 FAM114A1Q8IWE2 563 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 FAM217AQ8IXS0 508 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 CPXM2Q8N436 756 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 THAP9Q9H5L6 903 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 POLMQ9NP87 494 aaPredicted RBP16.45■□□□□ 0.22
HDAC4-213ENST00000496347 ABCC13Q9NSE7 274 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 SEMA4GQ9NTN9 838 aa16.45■□□□□ 0.22
HDAC4-213ENST00000496347 CDV3Q9UKY7 258 aaKnown RBP16.45■□□□□ 0.22
HDAC4-213ENST00000496347 THADAQ6YHU6 1953 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 SLC12A8A0AV02 714 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 RNF225M0QZC1 329 aaPredicted RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 SART1O43290 800 aaKnown RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 MED7O43513 233 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 LATS1O95835 1130 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 KRT5P13647 590 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 HARS2P49590 506 aaKnown RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 DGKGP49619 791 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 TRIP4Q15650 581 aaPredicted RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 DPCR1Q3MIW9 517 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 PLK5Q496M5 336 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 USP39Q53GS9 565 aaKnown RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 PMF1Q6P1K2 205 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 PRR23CQ6ZRP0 262 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 FMNL3Q8IVF7 1028 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 ABCA7Q8IZY2 2146 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 GOLGA1Q92805 767 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 MED15Q96RN5 788 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 TRIM62Q9BVG3 475 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 APEX2Q9UBZ4 518 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 AGO1Q9UL18 857 aaKnown RBP16.44■□□□□ 0.22
HDAC4-213ENST00000496347 SLC27A6Q9Y2P4 619 aa16.44■□□□□ 0.22
HDAC4-213ENST00000496347 CKAP5Q14008 2032 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 RHOBTB1O94844 696 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 CYBBP04839 570 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 HMBSP08397 361 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 LCP1P13796 627 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 PRKCSHP14314 528 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-213ENST00000496347 ERCC5P28715 1186 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-213ENST00000496347 RGS7P49802 495 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 MFAP3P55082 362 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 TPD52L1Q16890 204 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-213ENST00000496347 EXOC3L4Q17RC7 722 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 FYB2Q5VWT5 728 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 TMEM92Q6UXU6 159 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 GBP6Q6ZN66 633 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 IRF2BP1Q8IU81 584 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 DENND1CQ8IV53 801 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 NETO1Q8TDF5 533 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 NDRG1Q92597 394 aaKnown RBP16.43■□□□□ 0.22
HDAC4-213ENST00000496347 BHMTQ93088 406 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 SPACA7Q96KW9 195 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 UBE2TQ9NPD8 197 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-213ENST00000496347 FBXO10Q9UK96 956 aa16.43■□□□□ 0.22
HDAC4-213ENST00000496347 TNRC6BQ9UPQ9 1833 aaKnown RBP16.42■□□□□ 0.22
HDAC4-213ENST00000496347 TCRBV21S2A2A0A5A6 115 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 ANTXRLA6NF34 631 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 NPC1O15118 1278 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 TRIM24O15164 1050 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 LTFP02788 710 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 HOXB2P14652 356 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 HNRNPLP14866 589 aaKnown RBP eCLIP16.42■□□□□ 0.222e-10■■□□□ 13.2
HDAC4-213ENST00000496347 NTSR1P30989 418 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 ACADSBP45954 432 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 MTIF2P46199 727 aaKnown RBP16.42■□□□□ 0.22
HDAC4-213ENST00000496347 RPL34P49207 117 aaKnown RBP16.42■□□□□ 0.22
HDAC4-213ENST00000496347 E2F5Q15329 346 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 MAN2A1Q16706 1144 aa16.42■□□□□ 0.22
HDAC4-213ENST00000496347 RSPO4Q2I0M5 234 aaPredicted RBP16.42■□□□□ 0.22
HDAC4-213ENST00000496347 EGFLAMQ63HQ2 1017 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms