RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 MAN1A1P33908 653 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 RDXP35241 583 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 PPP3CCP48454 512 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 EPHA5P54756 1037 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 HDAC4P56524 1084 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 TAS2R40P59535 323 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SKIV2LQ15477 1246 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 SNX30Q5VWJ9 437 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 NYAP1Q6ZVC0 841 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 BEND5Q7L4P6 421 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 FAM131BQ86XD5 332 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 ACSF2Q96CM8 615 aaPredicted RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 CALR3Q96L12 384 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 CYP2S1Q96SQ9 504 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SLITRK6Q9H5Y7 841 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 ZWILCHQ9H900 591 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 KLHL11Q9NVR0 708 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SMPD4Q9NXE4 827 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.19■□□□□ 0.82
USP39-218ENST00000493829 MARCH2Q9P0N8 246 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 MRPS23Q9Y3D9 190 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 NOTCH4Q99466 2003 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 MOSPD3O75425 235 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 OAS1P00973 400 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 MIPP30301 263 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 MARCKSL1P49006 195 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 CTC1Q2NKJ3 1217 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SMTNL2Q2TAL5 461 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 PRSS36Q5K4E3 855 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 GPR158Q5T848 1215 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 MSANTD2Q6P1R3 559 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SYT10Q6XYQ8 523 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 SLFN11Q7Z7L1 901 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 ARL14EPQ8N8R7 260 aaPredicted RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 ITFG1Q8TB96 612 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 RNF34Q969K3 372 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 NT5C3BQ969T7 300 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 RNF38Q9H0F5 515 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 OLA1Q9NTK5 396 aaKnown RBP20.19■□□□□ 0.82
USP39-218ENST00000493829 LCMT1Q9UIC8 334 aa20.19■□□□□ 0.82
USP39-218ENST00000493829 DENND4CQ5VZ89 1909 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 SLC12A8A0AV02 714 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 IRAK2O43187 625 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 CKMP06732 381 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 IRF1P10914 325 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 MBL2P11226 248 aaPredicted RBP20.18■□□□□ 0.82
USP39-218ENST00000493829 ATP5C1P36542 298 aaKnown RBP20.18■□□□□ 0.82
USP39-218ENST00000493829 TXNRD3NBQ6F5E7 133 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 GET4Q7L5D6 327 aaPredicted RBP20.18■□□□□ 0.82
USP39-218ENST00000493829 GPR149Q86SP6 731 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 TADA2BQ86TJ2 420 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 NT5DC3Q86UY8 548 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 LEMD2Q8NC56 503 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 PABPC5Q96DU9 382 aaKnown RBP20.18■□□□□ 0.82
USP39-218ENST00000493829 SERPINB11Q96P15 392 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 PEBP4Q96S96 227 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 SMG9Q9H0W8 520 aaKnown RBP20.18■□□□□ 0.82
USP39-218ENST00000493829 TMPRSS4Q9NRS4 437 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 RRN3Q9NYV6 651 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 DNAI1Q9UI46 699 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 DNMT3LQ9UJW3 386 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 AMFRQ9UKV5 643 aa20.18■□□□□ 0.82
USP39-218ENST00000493829 FGF19O95750 216 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 LTBRP36941 435 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 SLC1A1P43005 524 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 TUBP50607 506 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 ARHGAP15Q53QZ3 475 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 STRADAQ7RTN6 431 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 CCDC185Q8N715 623 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 ZNF592Q92610 1267 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 CENPIQ92674 756 aaPredicted RBP20.17■□□□□ 0.82
USP39-218ENST00000493829 KRT35Q92764 455 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 CDK5RAP1Q96SZ6 601 aaKnown RBP20.17■□□□□ 0.82
USP39-218ENST00000493829 PSMB7Q99436 277 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 EYSQ5T1H1 3165 aa20.17■□□□□ 0.82
USP39-218ENST00000493829 H3BQ06 376 aaPredicted RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 FANCGO15287 622 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 PRPSAP2O60256 369 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 IGLV3-25P01717 112 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 ATP1A1P05023 1023 aaKnown RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 HOXB8P17481 243 aaPredicted RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 IL1R2P27930 398 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 GBP1P32455 592 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 SLC25A11Q02978 314 aaKnown RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 KCNT1Q5JUK3 1230 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 ZFYVE27Q5T4F4 411 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 SND1Q7KZF4 910 aaKnown RBP eCLIP20.16■□□□□ 0.824e-6■■□□□ 12.7
USP39-218ENST00000493829 GPATCH2LQ9NWQ4 482 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 USP18Q9UMW8 372 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 CLUHO75153 1309 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 TRAV19A0A0A6YYK7 116 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 SCAMP3O14828 347 aaKnown RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 MOCS2O96007 188 aaPredicted RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 HDCP19113 662 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 FSHRP23945 695 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 TBX4P57082 545 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 ETF1P62495 437 aaKnown RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 CBX2Q14781 532 aaPredicted RBP20.16■□□□□ 0.82
USP39-218ENST00000493829 ACAP1Q15027 740 aa20.16■□□□□ 0.82
USP39-218ENST00000493829 ZC3H12AQ5D1E8 599 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms