RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 RAD54BQ9Y620 910 aa8.66□□□□□ -1.02
USP39-216ENST00000490193 URB1O60287 2271 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 UBE4BO95155 1302 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 TP53BP1Q12888 1972 aaPredicted RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 A0A087WV48 116 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 CYSRT1A8MQ03 144 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 METTL12A8MUP2 240 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 MEI4A8MW99 385 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 FLRT2O43155 660 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 CILPO75339 1184 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 AP1G2O75843 785 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 CD2BP2O95400 341 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 DLATP10515 647 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 NCAM1P13591 858 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 ACO1P21399 889 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 MAOBP27338 520 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 ATP5C1P36542 298 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 MATKP42679 507 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 DGKGP49619 791 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 PGFP49763 221 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 MYL6P60660 151 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 BNC1Q01954 994 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 GOLGA8FQ08AF8 430 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 GOLGA8DPQ0D2H9 430 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 CAMK2BQ13554 666 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 CNNM4Q6P4Q7 775 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 KIAA1324Q6UXG2 1013 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 SCUBE3Q8IX30 993 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 C12orf56Q8IXR9 622 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 GALNT15Q8N3T1 639 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 ZNF276Q8N554 614 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 ZCCHC9Q8N567 271 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 XXYLT1Q8NBI6 393 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 ZNF516Q92618 1163 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 TOE1Q96GM8 510 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 CDC6Q99741 560 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 SMOQ99835 787 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 TRIM9Q9C026 710 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 MKRN2Q9H000 416 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 NACA2Q9H009 215 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 PCED1AQ9H1Q7 454 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 TNMDQ9H2S6 317 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 GAREM1Q9H706 876 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 PRDM16Q9HAZ2 1276 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 IL21RQ9HBE5 538 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 TLR8Q9NR97 1041 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 TM7SF3Q9NS93 570 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 THAP10Q9P2Z0 257 aaPredicted RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 NXF1Q9UBU9 619 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 LSM7Q9UK45 103 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 FNDC3AQ9Y2H6 1198 aaKnown RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 STON1Q9Y6Q2 735 aa8.65□□□□□ -1.02
USP39-216ENST00000490193 COL5A1P20908 1838 aaPredicted RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 MUC22E2RYF6 1773 aaPredicted RBP8.65□□□□□ -1.02
USP39-216ENST00000490193 CABIN1Q9Y6J0 2220 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 KCNJ18B7U540 433 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 WASH3PC4AMC7 463 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 E9PAM4 449 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 BCAT2O15382 392 aaPredicted RBP8.64□□□□□ -1.03
USP39-216ENST00000490193 BEST1O76090 585 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 TBX18O95935 607 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 PENKP01210 267 aaPredicted RBP8.64□□□□□ -1.03
USP39-216ENST00000490193 NEFLP07196 543 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 OXTRP30559 389 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 TPMTP51580 245 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 CDH8P55286 799 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 CLDN10P78369 228 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 EHHADHQ08426 723 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 TRPC3Q13507 836 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 STARD3Q14849 445 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 E2F5Q15329 346 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 BMT2Q1RMZ1 405 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 HLA-BQ31612 363 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 C8orf34Q49A92 452 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 DCAF12L1Q5VU92 463 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 ERICH6BQ5W0A0 696 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 TPGS1Q6ZTW0 290 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 CRYBG2Q8N1P7 616 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 RDH13Q8NBN7 331 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 SETD7Q8WTS6 366 aaKnown RBP8.64□□□□□ -1.03
USP39-216ENST00000490193 HNRNPLLQ8WVV9 542 aaKnown RBP8.64□□□□□ -1.03
USP39-216ENST00000490193 HPS3Q969F9 1004 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 CCDC127Q96BQ5 260 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 P2RY11Q96G91 374 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 MED10Q9BTT4 135 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 GPR174Q9BXC1 333 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 LRRC27Q9C0I9 530 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 SMYD3Q9H7B4 428 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 PNPLA8Q9NP80 782 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 OSGEPQ9NPF4 335 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 KRT82Q9NSB4 513 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 KBTBD4Q9NVX7 518 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 OSER1Q9NX31 292 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 CGNQ9P2M7 1197 aaKnown RBP8.64□□□□□ -1.03
USP39-216ENST00000490193 SCML2Q9UQR0 700 aa8.64□□□□□ -1.03
USP39-216ENST00000490193 SHROOM3Q8TF72 1996 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 HHLA1C9JL84 531 aa8.63□□□□□ -1.03
USP39-216ENST00000490193 PAPSS1O43252 624 aaPredicted RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 ATXN1LP0C7T5 689 aaKnown RBP8.63□□□□□ -1.03
USP39-216ENST00000490193 IL12RB1P42701 662 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms