RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 SUSD6Q92537 303 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 PGAP3Q96FM1 320 aaPredicted RBP18.33■□□□□ 0.52
CHMP3-207ENST00000485465 NECTIN4Q96NY8 510 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 SLC22A12Q96S37 553 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 CYP2S1Q96SQ9 504 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 FAM204AQ9H8W3 233 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 CALCOCO1Q9P1Z2 691 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 RASAL2Q9UJF2 1139 aa18.33■□□□□ 0.52
CHMP3-207ENST00000485465 USP15Q9Y4E8 981 aaPredicted RBP18.33■□□□□ 0.52
CHMP3-207ENST00000485465 C2orf16Q68DN1 1984 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 GOLGA6L9A6NEM1 432 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 TMEM110-MUSTN1A8MSY1 372 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 BUB1BO60566 1050 aaPredicted RBP18.32■□□□□ 0.52
CHMP3-207ENST00000485465 ENDOD1O94919 500 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 DESP17661 470 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 GBP1P32455 592 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 ACAP1Q15027 740 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 CDO1Q16878 200 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 SH3PXD2AQ5TCZ1 1133 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 POTEHQ6S545 545 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 GET4Q7L5D6 327 aaPredicted RBP18.32■□□□□ 0.52
CHMP3-207ENST00000485465 STRADAQ7RTN6 431 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 MIB1Q86YT6 1006 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 C17orf53Q8N3J3 647 aaPredicted RBP18.32■□□□□ 0.52
CHMP3-207ENST00000485465 FAM172AQ8WUF8 416 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 ZSWIM3Q96MP5 696 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 SERPINB11Q96P15 392 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 SLITRK6Q9H5Y7 841 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 DDIT4Q9NX09 232 aa18.32■□□□□ 0.52
CHMP3-207ENST00000485465 OBSL1O75147 1896 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 SYNJ2BP-COX16A0A087WUM0 186 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 SLC12A8A0AV02 714 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 GRXCR2A6NFK2 248 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 IRAK2O43187 625 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 MSI1O43347 362 aaKnown RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 F9P00740 461 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 MBL2P11226 248 aaPredicted RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 MAN1A1P33908 653 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 RDXP35241 583 aaKnown RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 SLC7A9P82251 487 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 DEUP1Q05D60 604 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 NME3Q13232 169 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 NNTQ13423 1086 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 SMAD4Q13485 552 aaKnown RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 EIF4EBP2Q13542 120 aaPredicted RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 CBX2Q14781 532 aaPredicted RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 RAB6CQ53S08 254 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 C11orf63Q6NUN7 778 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 NPAS3Q8IXF0 933 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 CMTM8Q8IZV2 173 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 ARFGAP1Q8N6T3 406 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 MAFAQ8NHW3 353 aaPredicted RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 FGF13Q92913 245 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 KLF16Q9BXK1 252 aaPredicted RBP18.31■□□□□ 0.52
CHMP3-207ENST00000485465 RAB6CQ9H0N0 254 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 POMKQ9H5K3 350 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 TMEM51Q9NW97 253 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 COX16Q9P0S2 106 aa18.31■□□□□ 0.52
CHMP3-207ENST00000485465 DOCK6Q96HP0 2047 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 ANAPC1Q9H1A4 1944 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 GRID2IPA4D2P6 1211 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 MBTPS2O43462 519 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 RNF8O76064 485 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 CKMP06732 381 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 AVPR1AP37288 418 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 KPNA1P52294 538 aaPredicted RBP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 ATXN1P54253 815 aaKnown RBP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 HDAC4P56524 1084 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 TRIP4Q15650 581 aaPredicted RBP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 DAAM2Q86T65 1068 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 LRRC57Q8N9N7 239 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 NCAPGQ9BPX3 1015 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 PIGVQ9NUD9 493 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 GDE1Q9NZC3 331 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 CDH7Q9ULB5 785 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 USTQ9Y2C2 406 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 TLR6Q9Y2C9 796 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 HBS1LQ9Y450 684 aaKnown RBP18.3■□□□□ 0.52
CHMP3-207ENST00000485465 CPQQ9Y646 472 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 ALG6Q9Y672 507 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 CAPN6Q9Y6Q1 641 aa18.3■□□□□ 0.52
CHMP3-207ENST00000485465 LRCH4O75427 683 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 PALMO75781 387 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 COMTP21964 271 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 WEE1P30291 646 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 PCK1P35558 622 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 SLC1A1P43005 524 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 CXCR3P49682 368 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 TBX4P57082 545 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 COG7P83436 770 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 LEXMQ3ZCV2 418 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 CC2D1AQ6P1N0 951 aaPredicted RBP18.29■□□□□ 0.52
CHMP3-207ENST00000485465 SND1Q7KZF4 910 aaKnown RBP eCLIP18.29■□□□□ 0.52
CHMP3-207ENST00000485465 SLFN11Q7Z7L1 901 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 CPNE8Q86YQ8 564 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 ZSCAN18Q8TBC5 510 aaPredicted RBP18.29■□□□□ 0.52
CHMP3-207ENST00000485465 SLC39A13Q96H72 371 aa18.29■□□□□ 0.52
CHMP3-207ENST00000485465 ZFRQ96KR1 1074 aaKnown RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms