RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	NUDT18	Q6ZVK8	323 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	TMPRSS6	Q8IU80	811 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	PARD3B	Q8TEW8	1205 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	SETD7	Q8WTS6	366 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	SYAP1	Q96A49	352 aa	Predicted RBP	13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	PIWIL1	Q96J94	861 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	ZDHHC5	Q9C0B5	715 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	MIR1-1HG	Q9H1L0	117 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	TM7SF3	Q9NS93	570 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	DKK4	Q9UBT3	224 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	SUSD2	Q9UGT4	822 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	EIF2B4	Q9UI10	523 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	SCML2	Q9UQR0	700 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	APOBEC2	Q9Y235	224 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	SLC27A6	Q9Y2P4	619 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	NFE2L3	Q9Y4A8	694 aa		13.59	□□□□□ -0.23
UBR4-213	ENST00000483922	ACACA	Q13085	2346 aa		13.58	□□□□□ -0.23
UBR4-213	ENST00000483922		A0A1B0GVT2	93 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	FAM149A	A5PLN7	773 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	PENK	P01210	267 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	IGLV3-19	P01714	112 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF883	P0CG24	379 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	RARG	P13631	454 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	SYT1	P21579	422 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	TXLNA	P40222	546 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	CSNK1E	P49674	416 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	NDST1	P52848	882 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	FAM26F	Q5R3K3	315 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	C1orf220	Q5T0J3	134 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	SPOPL	Q6IQ16	392 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	CNNM4	Q6P4Q7	775 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	C12orf56	Q8IXR9	622 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	RHBDD1	Q8TEB9	315 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	SORCS1	Q8WY21	1168 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	NACA2	Q9H009	215 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	TNMD	Q9H2S6	317 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	SCUBE2	Q9NQ36	999 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	TLR8	Q9NR97	1041 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	FAM49B	Q9NUQ9	324 aa		13.58	□□□□□ -0.24
UBR4-213	ENST00000483922	TENM4	Q6N022	2769 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	BCAT2	O15382	392 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ZBTB24	O43167	697 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	PRKCH	P24723	683 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ADORA2B	P29275	332 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	PLA2G4A	P47712	749 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	NCOA4	Q13772	614 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF234	Q14588	700 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	KIF19	Q2TAC6	998 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF699	Q32M78	642 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF667	Q5HYK9	610 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	KLHDC10	Q6PID8	442 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ADAM32	Q8TC27	787 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	JAKMIP2	Q96AA8	810 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	TNIP3	Q96KP6	325 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	C7orf25	Q9BPX7	421 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ORAI3	Q9BRQ5	295 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	BLZF1	Q9H2G9	400 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	FBXO44	Q9H4M3	255 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	C6orf106	Q9H6K1	298 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	DMAC2	Q9NW81	257 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	SNX11	Q9Y5W9	270 aa		13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	URB1	O60287	2271 aa	Known RBP	13.57	□□□□□ -0.24
UBR4-213	ENST00000483922	ASXL3	Q9C0F0	2248 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	KNL1	Q8NG31	2342 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	GOLGA8CP	A6NN73	597 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	MEI4	A8MW99	385 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	PHACTR2	O75167	634 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	PRB1	P04280	392 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	NEFL	P07196	543 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	C7	P10643	843 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	ACSL1	P33121	698 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	MATK	P42679	507 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	ASPA	P45381	313 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	BIRC3	Q13489	604 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	PTPRN	Q16849	979 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	SHC4	Q6S5L8	630 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	STXBP4	Q6ZWJ1	553 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	CACUL1	Q86Y37	369 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	SPRYD3	Q8NCJ5	442 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	LINC00301	Q8NCQ3	95 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	DHX58	Q96C10	678 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	SIPA1	Q96FS4	1042 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	SLC39A2	Q9NP94	309 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	ELOVL2	Q9NXB9	296 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	DNMT3L	Q9UJW3	386 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	LSM7	Q9UK45	103 aa	Known RBP	13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	AGO1	Q9UL18	857 aa	Known RBP	13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	MTMR6	Q9Y217	621 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922	ATP8B3	O60423	1300 aa		13.56	□□□□□ -0.24
UBR4-213	ENST00000483922		A0A087WV48	116 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	EXOC3	O60645	756 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	HMBS	P08397	361 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	HLA-E	P13747	358 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	NASP	P49321	788 aa	Predicted RBP	13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	KIF11	P52732	1056 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	CLDN6	P56747	220 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	SNRPF	P62306	86 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	ASIC1	P78348	528 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	SMAD1	Q15797	465 aa	Known RBP	13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms