RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MBTPS2O43462 519 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CKMP06732 381 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 TFE3P19532 575 aaPredicted RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 AVPR1AP37288 418 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 HADHBP55084 474 aaKnown RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 DEUP1Q05D60 604 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 NME3Q13232 169 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 PIGHQ14442 188 aaPredicted RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 MESDQ14696 234 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 IFI16Q16666 785 aaKnown RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 CDO1Q16878 200 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 TAC4Q86UU9 113 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 MIB1Q86YT6 1006 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 REXO1L1PQ8IX06 675 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 NPAS3Q8IXF0 933 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CMTM8Q8IZV2 173 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CCAR2Q8N163 923 aaKnown RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 TPCN2Q8NHX9 752 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 FGF13Q92913 245 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 NT5C3BQ969T7 300 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CALR3Q96L12 384 aaKnown RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 ZSWIM3Q96MP5 696 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 SERPINB11Q96P15 392 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 SMOC2Q9H3U7 446 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 DDIT4Q9NX09 232 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.76□□□□□ -0.374e-7■■■■□ 22.6
SDC1-206ENST00000482879 COX16Q9P0S2 106 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 LCMT1Q9UIC8 334 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CDH7Q9ULB5 785 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 MYO10Q9HD67 2058 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 MSI1O43347 362 aaKnown RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 RNF8O76064 485 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 PROSCO94903 275 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 MOCS3O95396 460 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 OLFM2O95897 454 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 F9P00740 461 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 HMBSP08397 361 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 GBP2P32456 591 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 KPNA1P52294 538 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 TBX4P57082 545 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 SLC7A9P82251 487 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 COG7P83436 770 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 ZNF252P-AS1Q0IIN9 211 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 ACAP1Q15027 740 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 LEXMQ3ZCV2 418 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 SH3PXD2AQ5TCZ1 1133 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 OTUD1Q5VV17 481 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 POTEHQ6S545 545 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 SND1Q7KZF4 910 aaKnown RBP eCLIP12.75□□□□□ -0.375e-8■■□□□ 12.9
SDC1-206ENST00000482879 STRADAQ7RTN6 431 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 RNF10Q8N5U6 811 aaKnown RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 ZSCAN18Q8TBC5 510 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 FAM172AQ8WUF8 416 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 CENPIQ92674 756 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 RNF34Q969K3 372 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 PGAP3Q96FM1 320 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 MYADMQ96S97 322 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 KLF16Q9BXK1 252 aaPredicted RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 ADAM33Q9BZ11 813 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 GKN1Q9NS71 199 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 SMPD4Q9NXE4 827 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 GDE1Q9NZC3 331 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 USTQ9Y2C2 406 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 HBS1LQ9Y450 684 aaKnown RBP12.75□□□□□ -0.37
SDC1-206ENST00000482879 CPQQ9Y646 472 aa12.75□□□□□ -0.37
SDC1-206ENST00000482879 USP27XA6NNY8 438 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 IRAK2O43187 625 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 BUB1BO60566 1050 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 ENDOD1O94919 500 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 IGLV3-25P01717 112 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 RDXP35241 583 aaKnown RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 ATXN1P54253 815 aaKnown RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 TRIP4Q15650 581 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 RAB6CQ53S08 254 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 CC2D1AQ6P1N0 951 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 SCYL2Q6P3W7 929 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 OTOP3Q7RTS5 596 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 BNIPLQ7Z465 357 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 ARID3BQ8IVW6 561 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 C17orf53Q8N3J3 647 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 NIPA2Q8N8Q9 360 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 KIAA1524Q8TCG1 905 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 NCAPGQ9BPX3 1015 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 RAB6CQ9H0N0 254 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 SMG9Q9H0W8 520 aaKnown RBP12.74□□□□□ -0.37
SDC1-206ENST00000482879 PRDM6Q9NQX0 595 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 PIGVQ9NUD9 493 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 TMEM51Q9NW97 253 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 CALCOCO1Q9P1Z2 691 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 ARHGAP26Q9UNA1 814 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 TLR6Q9Y2C9 796 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 ZKSCAN5Q9Y2L8 839 aa12.74□□□□□ -0.37
SDC1-206ENST00000482879 MYOFQ9NZM1 2061 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 GRID2IPA4D2P6 1211 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 GOLGA6L9A6NEM1 432 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 PALMO75781 387 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 IRF1P10914 325 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 WEE1P30291 646 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 MAN1A1P33908 653 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms