RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 HNRNPA1P09651 372 aaKnown RBP eCLIP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 HOXA9P31269 272 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 CXCR3P49682 368 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 EIF4EBP2Q13542 120 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 WHAMMP3Q1A5X7 153 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 PABPC1LQ4VXU2 614 aaKnown RBP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 HECTD3Q5T447 861 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 ERMARDQ5T6L9 678 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 SEL1L2Q5TEA6 688 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 ZNF697Q5TEC3 545 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 ELMSAN1Q6PJG2 1045 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 TMEM150AQ86TG1 271 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 TMC8Q8IU68 726 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 RASGEF1CQ8N431 466 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 CCDC185Q8N715 623 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 CMASQ8NFW8 434 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 TEKT4Q8WW24 435 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 RAPGEF5Q92565 580 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 CDK5RAP1Q96SZ6 601 aaKnown RBP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 CORO1BQ9BR76 489 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 SNRNP25Q9BV90 132 aaKnown RBP18.29■□□□□ 0.52
UPF3A-206ENST00000480362 GPATCH2LQ9NWQ4 482 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 FZD10Q9ULW2 581 aa18.29■□□□□ 0.52
UPF3A-206ENST00000480362 LRRD1A4D1F6 860 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 SPDYE4A6NLX3 237 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 MSI1O43347 362 aaKnown RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 PTPN2P17706 415 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 KDELR1P24390 212 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 GABRR2P28476 465 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ADRA1BP35368 520 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ATP5C1P36542 298 aaKnown RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 PAFAH1B1P43034 410 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 RBM10P98175 930 aaKnown RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ODF2Q5BJF6 829 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ZC3H12AQ5D1E8 599 aaKnown RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 CCDC181Q5TID7 509 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 TADA2BQ86TJ2 420 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 CCDC50Q8IVM0 306 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 KCTD6Q8NC69 237 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ACTRT1Q8TDG2 376 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 RNF34Q969K3 372 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 PPP2R3CQ969Q6 453 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 RBM41Q96IZ5 413 aaKnown RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 SERPINB11Q96P15 392 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 CDCA3Q99618 268 aaPredicted RBP18.28■□□□□ 0.52
UPF3A-206ENST00000480362 IGFLR1Q9H665 355 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 WDCPQ9H6R7 721 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 ZDHHC7Q9NXF8 308 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 SMARCAL1Q9NZC9 954 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 MARCH2Q9P0N8 246 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 RNF14Q9UBS8 474 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 RASAL2Q9UJF2 1139 aa18.28■□□□□ 0.52
UPF3A-206ENST00000480362 PDE2AO00408 941 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-206ENST00000480362 XYLBO75191 536 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 MYL4P12829 197 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 GTF2F1P35269 517 aaKnown RBP eCLIP18.27■□□□□ 0.522e-6■■■■□ 26
UPF3A-206ENST00000480362 CETN2P41208 172 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 CA9Q16790 459 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 ARL13BQ3SXY8 428 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 MAGEB5Q9BZ81 275 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 PRKD2Q9BZL6 878 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 ASAH2Q9NR71 780 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 TMPRSS4Q9NRS4 437 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.27■□□□□ 0.52
UPF3A-206ENST00000480362 TMEM51Q9NW97 253 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 HCFC1R1Q9NWW0 138 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 AP4E1Q9UPM8 1137 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 TLR6Q9Y2C9 796 aa18.27■□□□□ 0.52
UPF3A-206ENST00000480362 CCDC195A0A1B0GUA6 201 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 SLC12A8A0AV02 714 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 C3orf70A6NLC5 250 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 COCHO43405 550 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 TUBP50607 506 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 ARSEP51690 589 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 AIF1P55008 147 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 CDH6P55285 790 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 TBX4P57082 545 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 CKAP4Q07065 602 aaKnown RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 KCNC3Q14003 757 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 KRT81Q14533 505 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 LLGL1Q15334 1064 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 TRIP4Q15650 581 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 MFSD7Q6UXD7 560 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 SPOCD1Q6ZMY3 1216 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 GAREM2Q75VX8 874 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 ANKS1BQ7Z6G8 1248 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 MIB1Q86YT6 1006 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 VN1R2Q8NFZ6 395 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 NTAN1Q96AB6 310 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 CARD6Q9BX69 1037 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 NACA2Q9H009 215 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 TKTL2Q9H0I9 626 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 PRDM12Q9H4Q4 367 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 DHX35Q9H5Z1 703 aaKnown RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 NSUN3Q9H649 340 aaKnown RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 ANLNQ9NQW6 1124 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 DNMT3BQ9UBC3 853 aaKnown RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 DNMT3LQ9UJW3 386 aa18.26■□□□□ 0.51
UPF3A-206ENST00000480362 TTC7AQ9ULT0 858 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-206ENST00000480362 MYO7AQ13402 2215 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms