RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 COX16Q9P0S2 106 aa13.5□□□□□ -0.25
SEC13-216ENST00000479868 FZD10Q9ULW2 581 aa13.5□□□□□ -0.25
SEC13-216ENST00000479868 NR2E3Q9Y5X4 410 aa13.5□□□□□ -0.25
SEC13-216ENST00000479868 CAPN7Q9Y6W3 813 aa13.5□□□□□ -0.25
SEC13-216ENST00000479868 TSC2P49815 1807 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 APRTP07741 180 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 SCNN1GP51170 649 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 KLHL38Q2WGJ6 581 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 SLC45A4Q5BKX6 768 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 SYPL2Q5VXT5 272 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 AGMOQ6ZNB7 445 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 KCTD13Q8WZ19 329 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 NT5C3BQ969T7 300 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 LRRC4Q9HBW1 653 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 TMEM30AQ9NV96 361 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 DTLQ9NZJ0 730 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 SENP1Q9P0U3 644 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 GRID1Q9ULK0 1009 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 MYO18AQ92614 2054 aaKnown RBP13.49□□□□□ -0.25
SEC13-216ENST00000479868 TCRBV9S1A1TA0A576 114 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 MYBPHLA2RUH7 354 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 CASTOR2A6NHX0 329 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 CCT8L1PA6NM43 557 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 TYROBPO43914 113 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 METTL18O95568 372 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 CPP00450 1065 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 KRT4P19013 534 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 TKTL1P51854 596 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 ACTN3Q08043 901 aaPredicted RBP13.49□□□□□ -0.25
SEC13-216ENST00000479868 MGAT3Q09327 533 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 CAND1Q86VP6 1230 aaKnown RBP13.49□□□□□ -0.25
SEC13-216ENST00000479868 CDKL3Q8IVW4 592 aaPredicted RBP13.49□□□□□ -0.25
SEC13-216ENST00000479868 SIX6OS1Q8N1H7 587 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 MZB1Q8WU39 189 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 NPY6RQ99463 290 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 UPF3AQ9H1J1 476 aaKnown RBP13.49□□□□□ -0.25
SEC13-216ENST00000479868 CHST12Q9NRB3 414 aa13.49□□□□□ -0.25
SEC13-216ENST00000479868 NRP1O14786 923 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 MYCNP04198 464 aaPredicted RBP13.48□□□□□ -0.25
SEC13-216ENST00000479868 FAM200BP0CF97 657 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 TSHRP16473 764 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 ATP2A2P16615 1042 aaKnown RBP13.48□□□□□ -0.25
SEC13-216ENST00000479868 ZFXP17010 805 aaPredicted RBP13.48□□□□□ -0.25
SEC13-216ENST00000479868 TAC1P20366 129 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 CA4P22748 312 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 NOS2P35228 1153 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 MSH2P43246 934 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 NR2C2P49116 596 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 FLT3LGP49771 235 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 CACNA2D1P54289 1103 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 YWHAGP61981 247 aaKnown RBP eCLIP13.48□□□□□ -0.25
SEC13-216ENST00000479868 IL9RQ01113 521 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 XRCC4Q13426 336 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 MFSD14CQ5VZR4 134 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 CGB2Q6NT52 195 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 GPRIN1Q7Z2K8 1008 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 BNIPLQ7Z465 357 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 PACS2Q86VP3 889 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 NETO2Q8NC67 525 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 PCED1BQ96HM7 432 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 QKIQ96PU8 341 aaKnown RBP eCLIP13.48□□□□□ -0.25
SEC13-216ENST00000479868 KCNK16Q96T55 309 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 SYT15Q9BQS2 421 aa13.48□□□□□ -0.25
SEC13-216ENST00000479868 SMG5Q9UPR3 1016 aaKnown RBP13.48□□□□□ -0.25
SEC13-216ENST00000479868 M0QYT0 321 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 MGEA5O60502 916 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 FYNP06241 537 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 FAM163BP0C2L3 166 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 IBSPP21815 317 aaPredicted RBP13.47□□□□□ -0.25
SEC13-216ENST00000479868 ARL4AP40617 200 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 MAGEA6P43360 314 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 SLC18A1P54219 525 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 SREBF2Q12772 1141 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 NME3Q13232 169 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 SLC1A5Q15758 541 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 KBTBD12Q3ZCT8 623 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 CTU1Q7Z7A3 348 aaKnown RBP13.47□□□□□ -0.25
SEC13-216ENST00000479868 RNF169Q8NCN4 708 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 ZMIZ2Q8NF64 920 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 CYTH2Q99418 400 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 SMOQ99835 787 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 KDM4CQ9H3R0 1056 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 ARHGEF4Q9NR80 690 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 PIGVQ9NUD9 493 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 USP15Q9Y4E8 981 aaPredicted RBP13.47□□□□□ -0.25
SEC13-216ENST00000479868 SEPT4O43236 478 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 ADAMTS4O75173 837 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 GCATO75600 419 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 AP1G2O75843 785 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 ASGR1P07306 291 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 VAV1P15498 845 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 CD52P31358 61 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 LHX1P48742 406 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 FCGRTP55899 365 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 LACTB2Q53H82 288 aaPredicted RBP13.47□□□□□ -0.25
SEC13-216ENST00000479868 DSTYKQ6XUX3 929 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 ZNF534Q76KX8 674 aa13.47□□□□□ -0.25
SEC13-216ENST00000479868 PRPF39Q86UA1 669 aaKnown RBP13.47□□□□□ -0.25
SEC13-216ENST00000479868 FAM35AQ86V20 835 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms