RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	RARG	P13631	454 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	HMGA1	P17096	107 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	IL4R	P24394	825 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	L1CAM	P32004	1257 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	GBP1	P32455	592 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	IRS1	P35568	1242 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	SLC7A5	Q01650	507 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	UBE3A	Q05086	875 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CAMK1	Q14012	370 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	DPYSL3	Q14195	570 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PDK2	Q15119	407 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TAZ	Q16635	292 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	KCTD19	Q17RG1	926 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	LILRA6	Q6PI73	481 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MAP7D3	Q8IWC1	876 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	HDAC7	Q8WUI4	952 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MAIP1	Q8WWC4	291 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	C1orf54	Q8WWF1	131 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MAGOHB	Q96A72	148 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TGS1	Q96RS0	853 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TTLL2	Q9BWV7	592 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	WDCP	Q9H6R7	721 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	ANKZF1	Q9H8Y5	726 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CERS4	Q9HA82	394 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PCDH18	Q9HCL0	1135 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	ANLN	Q9NQW6	1124 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MAFF	Q9ULX9	164 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	INSL5	Q9Y5Q6	135 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TBX18	O95935	607 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	IGLV3-25	P01717	112 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	ZDHHC11B	P0C7U3	371 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PTPN7	P35236	360 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	ADRA1B	P35368	520 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CXCR3	P49682	368 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	DYNLT1	P63172	113 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	SNX1	Q13596	522 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TAF12	Q16514	161 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PPP2R5E	Q16537	467 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	RFX6	Q8HWS3	928 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	GPR161	Q8N6U8	529 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	RNF34	Q969K3	372 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	KCTD15	Q96SI1	283 aa	Predicted RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	FAM118B	Q9BPY3	351 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MAK16	Q9BXY0	300 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	PBX4	Q9BYU1	374 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656	MTMR10	Q9NXD2	777 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CLIC5	Q9NZA1	410 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	AMACR	Q9UHK6	382 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.66	□□□□□ -0.54
APTX-223	ENST00000479656		H0YGN5	161 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656		I6L893	689 aa	Predicted RBP	11.65	□□□□□ -0.54
APTX-223	ENST00000479656	MSI1	O43347	362 aa	Known RBP	11.65	□□□□□ -0.54
APTX-223	ENST00000479656	CST8	O60676	142 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	PHF2	O75151	1096 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	KCNJ1	P48048	391 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	PSEN1	P49768	467 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	EPHB3	P54753	998 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	ERVK-21	P61565	698 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	GPM6B	Q13491	265 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	VEPH1	Q14D04	833 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	DPYSL2	Q16555	572 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	C8orf74	Q6P047	294 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	FAM71B	Q8TC56	605 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	ATG4A	Q8WYN0	398 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	ZNF512	Q96ME7	567 aa	Predicted RBP	11.65	□□□□□ -0.54
APTX-223	ENST00000479656	RNF157	Q96PX1	679 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	PARD6B	Q9BYG5	372 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	TKTL2	Q9H0I9	626 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	SMOC2	Q9H3U7	446 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	SAE1	Q9UBE0	346 aa	Predicted RBP	11.65	□□□□□ -0.54
APTX-223	ENST00000479656	DMGDH	Q9UI17	866 aa	Known RBP	11.65	□□□□□ -0.54
APTX-223	ENST00000479656	EFR3B	Q9Y2G0	817 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	GREB1	Q4ZG55	1949 aa		11.65	□□□□□ -0.54
APTX-223	ENST00000479656	COL4A4	P53420	1690 aa	Predicted RBP	11.65	□□□□□ -0.55
APTX-223	ENST00000479656	MYO16	Q9Y6X6	1858 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	IRAK2	O43187	625 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	RAD51C	O43502	376 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	LPXN	O60711	386 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	COIL	P38432	576 aa	Predicted RBP	11.64	□□□□□ -0.55
APTX-223	ENST00000479656	EFEMP1	Q12805	493 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	PLD1	Q13393	1074 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	CYP1B1	Q16678	543 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	ARL13B	Q3SXY8	428 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	GLE1	Q53GS7	698 aa	Known RBP	11.64	□□□□□ -0.55
APTX-223	ENST00000479656	ANKRD20A8P	Q5CZ79	823 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	CCDC70	Q6NSX1	233 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	TTC27	Q6P3X3	843 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	CCDC137	Q6PK04	289 aa	Known RBP	11.64	□□□□□ -0.55
APTX-223	ENST00000479656	PSTK	Q8IV42	348 aa	Known RBP	11.64	□□□□□ -0.55
APTX-223	ENST00000479656	KREMEN2	Q8NCW0	462 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	NTAN1	Q96AB6	310 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	HAUS1	Q96CS2	278 aa		11.64	□□□□□ -0.55
APTX-223	ENST00000479656	MYRFL	Q96LU7	910 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms