RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 B4GALT3O60512 393 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 CXCL14O95715 111 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FAM163BP0C2L3 166 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 LINC00271P0C7V0 271 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SRGAP2BP0DMP2 458 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 CTSAP10619 480 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 DRD2P14416 443 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 NME1P15531 152 aaKnown RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 TYMPP19971 482 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 TBXAS1P24557 533 aaPredicted RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 NTF4P34130 210 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 BRCC3P46736 316 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 LHX1P48742 406 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 AARSP49588 968 aaKnown RBP eCLIP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 MYL6P60660 151 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 NOP14P78316 857 aaKnown RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 DSG1Q02413 1049 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 PPP3CAQ08209 521 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 IQCB1Q15051 598 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 KRT31Q15323 416 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FXNQ16595 210 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 EXOC3L4Q17RC7 722 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 MSMPQ1L6U9 139 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 WDR72Q3MJ13 1102 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 PLPP4Q5VZY2 271 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 ZNF280DQ6N043 979 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FDX2Q6P4F2 183 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 LUZP1Q86V48 1076 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 PPFIBP1Q86W92 1011 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 TOP6BLQ8N6T0 577 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 C12orf50Q8NA57 414 aaPredicted RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 RNF214Q8ND24 703 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FLCNQ8NFG4 579 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SPPL3Q8TCT6 385 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 RIN2Q8WYP3 895 aaPredicted RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 MRPL38Q96DV4 380 aaKnown RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SENP8Q96LD8 212 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 MED15Q96RN5 788 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 ZBP1Q9H171 429 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 VPS16Q9H269 839 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SNX25Q9H3E2 840 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 ATXN3LQ9H3M9 355 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 NDST4Q9H3R1 872 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 PRDM12Q9H4Q4 367 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FAM124BQ9H5Z6 455 aaPredicted RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 KCND1Q9NSA2 647 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 GDAP2Q9NXN4 497 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 TAB2Q9NYJ8 693 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 GCNT4Q9P109 453 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 TJP2Q9UDY2 1190 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 LIMA1Q9UHB6 759 aaKnown RBP6.57□□□□□ -1.36
SF3B1-209ENST00000479532 DPP7Q9UHL4 492 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SIX4Q9UIU6 781 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SNX9Q9Y5X1 595 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 SCN1AP35498 2009 aa6.57□□□□□ -1.36
SF3B1-209ENST00000479532 FAM221BA6H8Z2 402 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 FAM86C2PA6NEL3 165 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 OR6C75A6NL08 312 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CHURC1-FNTBB4DL54 471 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 I3L4J1 428 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 PPEF2O14830 753 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 PPP1R12AO14974 1030 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 GRM6O15303 877 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 NCK2O43639 380 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CSPG5O95196 566 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TIAF1O95411 115 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 VNN1O95497 513 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CPP00450 1065 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 ASS1P00966 412 aaKnown RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CST3P01034 146 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 IVLP07476 585 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 FOSL2P15408 326 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 ZNF18P17022 549 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 PCSK1P29120 753 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TKTP29401 623 aaKnown RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 NDUFV1P49821 464 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 COPB1P53618 953 aaKnown RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TSPY1Q01534 308 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 UBXN1Q04323 297 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 NCAPHQ15003 741 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 PSMD5Q16401 504 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CTXN3Q4LDR2 81 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CBWD6Q4V339 395 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CBWD3Q5JTY5 395 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 CBWD5Q5RIA9 395 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 C1orf220Q5T0J3 134 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 SCARA5Q6ZMJ2 495 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 C15orf39Q6ZRI6 1047 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 ENOSF1Q7L5Y1 443 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 JAZF1Q86VZ6 243 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TMEM173Q86WV6 379 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 IRF2BP1Q8IU81 584 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 RNF168Q8IYW5 571 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 DCP1BQ8IZD4 617 aaKnown RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 ADGRF2Q8IZF7 708 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 PPM1KQ8N3J5 372 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TAB3Q8N5C8 712 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-209ENST00000479532 DEFB123Q8N688 67 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 FAM13CQ8NE31 585 aa6.56□□□□□ -1.36
SF3B1-209ENST00000479532 TAS1R2Q8TE23 839 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms