RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ERGIC2Q96RQ1 377 aa16.29■□□□□ 0.2
HMGA1-206ENST00000478214 CPXM1Q96SM3 734 aa16.29■□□□□ 0.2
HMGA1-206ENST00000478214 DCLK3Q9C098 648 aa16.29■□□□□ 0.2
HMGA1-206ENST00000478214 AGO1Q9UL18 857 aaKnown RBP16.29■□□□□ 0.2
HMGA1-206ENST00000478214 HBS1LQ9Y450 684 aaKnown RBP16.29■□□□□ 0.2
HMGA1-206ENST00000478214 ANTXRLA6NF34 631 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 GFPT2O94808 682 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 NCAM1P13591 858 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 EIF2DP41214 584 aaKnown RBP16.28■□□□□ 0.2
HMGA1-206ENST00000478214 NBL1P41271 181 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 CCR3P51677 355 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 KDSRQ06136 332 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 ZNF528Q3MIS6 628 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 FBXO43Q4G163 708 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 NOP9Q86U38 636 aaKnown RBP16.28■□□□□ 0.2
HMGA1-206ENST00000478214 SFTPA1Q8IWL2 248 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 ETFBKMTQ8IXQ9 262 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 NEK11Q8NG66 645 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 DDX1Q92499 740 aaKnown RBP16.28■□□□□ 0.2
HMGA1-206ENST00000478214 P2RY11Q96G91 374 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 PIWIL1Q96J94 861 aaKnown RBP16.28■□□□□ 0.2
HMGA1-206ENST00000478214 PPP1R13BQ96KQ4 1090 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 PNKPQ96T60 521 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 BBS2Q9BXC9 721 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 PDCL3Q9H2J4 239 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 NAALADL1Q9UQQ1 740 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 ZNF510Q9Y2H8 683 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 R4GN57 208 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 PIEZO1Q92508 2521 aa16.28■□□□□ 0.2
HMGA1-206ENST00000478214 VPS13AQ96RL7 3174 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 NEDD8-MDP1E9PL57 170 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 K7EQS6 105 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 TEX33O43247 280 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 TULP3O75386 442 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 TDGF1P13385 188 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 TYRP14679 529 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 HOXC13P31276 330 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 JAM2P57087 298 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 TAF5Q15542 800 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 SKOR2Q2VWA4 1001 aaPredicted RBP16.27■□□□□ 0.2
HMGA1-206ENST00000478214 ZSCAN23Q3MJ62 389 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 PTPN20Q4JDL3 420 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 PHTF2Q8N3S3 785 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 EPS8L1Q8TE68 723 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 DQX1Q8TE96 717 aaKnown RBP16.27■□□□□ 0.2
HMGA1-206ENST00000478214 BHMTQ93088 406 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 NOX5Q96PH1 765 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 SPAG5Q96R06 1193 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 CBX8Q9HC52 389 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 RTN4Q9NQC3 1192 aaKnown RBP16.27■□□□□ 0.2
HMGA1-206ENST00000478214 ARHGEF4Q9NR80 690 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 POLR3BQ9NW08 1133 aaPredicted RBP16.27■□□□□ 0.2
HMGA1-206ENST00000478214 MARK1Q9P0L2 795 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 WDR35Q9P2L0 1181 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 CEP83Q9Y592 693 aa16.27■□□□□ 0.2
HMGA1-206ENST00000478214 MYOFQ9NZM1 2061 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 ZFHX2Q9C0A1 2572 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-206ENST00000478214 FAM170AA1A519 330 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.26■□□□□ 0.19
HMGA1-206ENST00000478214 CHURC1-FNTBB4DL54 471 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 TRIM24O15164 1050 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 KAT7O95251 611 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 ERBB2P04626 1255 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 APODP05090 189 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 MMEP08473 750 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 SOX5P35711 763 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 GRIA2P42262 883 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 HARS2P49590 506 aaKnown RBP16.26■□□□□ 0.19
HMGA1-206ENST00000478214 SEC13P55735 322 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 SYPL2Q5VXT5 272 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 FAM183BPQ6ZVS7 135 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 LUZP1Q86V48 1076 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 TMEM35BQ8NCS4 154 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 RPLP0P6Q8NHW5 317 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 SLC20A1Q8WUM9 679 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 NELL1Q92832 810 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 PLK2Q9NYY3 685 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 DEC1Q9P2X7 70 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 DAAM1Q9Y4D1 1078 aa16.26■□□□□ 0.19
HMGA1-206ENST00000478214 K7ESF4 209 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 CAPN9O14815 690 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 CACNG3O60359 315 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 PAPSS2O95340 614 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 IGLV3-27P01718 113 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 CDH5P33151 784 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 CHKAP35790 457 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 STAT1P42224 750 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 TBX4P57082 545 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 YWHAZP63104 245 aaKnown RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 PPP2R5DQ14738 602 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 C2orf27AQ580R0 203 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 OR6B2Q6IFH4 312 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 BEND5Q7L4P6 421 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 ALYREFQ86V81 257 aaKnown RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 ADAM32Q8TC27 787 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 IPO4Q8TEX9 1081 aaKnown RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 USP33Q8TEY7 942 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 NAP1L5Q96NT1 182 aaPredicted RBP16.25■□□□□ 0.19
HMGA1-206ENST00000478214 SYNCQ9H7C4 482 aa16.25■□□□□ 0.19
HMGA1-206ENST00000478214 POPDC2Q9HBU9 364 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms