RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 BICDL2A1A5D9 508 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 P4HA2O15460 535 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 PAEPP09466 180 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 ZNF806P0C7X5 589 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 BRD2P25440 801 aaKnown RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 CORO1AP31146 461 aaKnown RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 GRAMD4Q6IC98 578 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 TCEAL6Q6IPX3 200 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 PMF1Q6P1K2 205 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 IRF2BP1Q8IU81 584 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 FAM217AQ8IXS0 508 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 EHBP1Q8NDI1 1231 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 RLN3Q8WXF3 142 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 TCEAL3Q969E4 200 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 KIAA1468Q9P260 1216 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 CDV3Q9UKY7 258 aaKnown RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 CLEC4EQ9ULY5 219 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 CNTN6Q9UQ52 1028 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 DCDC2BA2VCK2 349 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 GFRA2O00451 464 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 SETSIPP0DME0 302 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 MPLP40238 635 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 P2RY2P41231 377 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 UBE2HP62256 183 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 YWHAEP62258 255 aaKnown RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 GOLGA8FQ08AF8 430 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 GOLGA8DPQ0D2H9 430 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 TRIP4Q15650 581 aaPredicted RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 EOGTQ5NDL2 527 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 PMS2CLQ68D20 193 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 ARHGAP18Q8N392 663 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 ZNF513Q8N8E2 541 aaPredicted RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 KCNV2Q8TDN2 545 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 INTS2Q9H0H0 1204 aaKnown RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 WDR35Q9P2L0 1181 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 MBD1Q9UIS9 605 aaPredicted RBP14.78□□□□□ -0.04
UPF3A-204ENST00000475218 KIAA1257Q9ULG3 409 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 PCDHB4Q9Y5E5 795 aa14.78□□□□□ -0.04
UPF3A-204ENST00000475218 SLC12A8A0AV02 714 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 PIK3R2O00459 728 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 SLC30A4O14863 429 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 WASP42768 502 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 RGS7P49802 495 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 DAOAP59103 153 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 COG7P83436 770 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 GCNT1Q02742 428 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 CNGA2Q16280 664 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 MAP7D1Q3KQU3 841 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 BSPRYQ5W0U4 402 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 KIAA1211LQ6NV74 962 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 TADA2BQ86TJ2 420 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 DENND1CQ8IV53 801 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 SCML4Q8N228 414 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 TRIML1Q8N9V2 468 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 RBBP8NLQ8NC74 664 aaPredicted RBP14.77□□□□□ -0.05
UPF3A-204ENST00000475218 CLEC4CQ8WTT0 213 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 EDEM1Q92611 657 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 CDK5RAP1Q96SZ6 601 aaKnown RBP14.77□□□□□ -0.05
UPF3A-204ENST00000475218 PCDHGA5Q9Y5G8 931 aa14.77□□□□□ -0.05
UPF3A-204ENST00000475218 BCLAF3A2AJT9 711 aaKnown RBP14.76□□□□□ -0.05
UPF3A-204ENST00000475218 AFPP02771 609 aaKnown RBP14.76□□□□□ -0.05
UPF3A-204ENST00000475218 GABRG2P18507 467 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 DGKGP49619 791 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 APBA1Q02410 837 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 GEN1Q17RS7 908 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 USP39Q53GS9 565 aaKnown RBP14.76□□□□□ -0.05
UPF3A-204ENST00000475218 NETO1Q8TDF5 533 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 XPO6Q96QU8 1125 aaKnown RBP14.76□□□□□ -0.05
UPF3A-204ENST00000475218 RTKNQ9BST9 563 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 LRRC4Q9HBW1 653 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 HESX1Q9UBX0 185 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 SFMBT1Q9UHJ3 866 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 RWDD2AQ9UIY3 292 aa14.76□□□□□ -0.05
UPF3A-204ENST00000475218 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.76□□□□□ -0.05
UPF3A-204ENST00000475218 TCRBV21S2A2A0A5A6 115 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 TM4SF5O14894 197 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 GNA14O95837 355 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 FYNP06241 537 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 LCP1P13796 627 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 NTSR1P30989 418 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 MFAP3P55082 362 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 SLC8A3P57103 927 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 GJB7Q6PEY0 223 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 RSRC2Q7L4I2 434 aaKnown RBP14.75□□□□□ -0.05
UPF3A-204ENST00000475218 FMNL3Q8IVF7 1028 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 HMGB4Q8WW32 186 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 ERLEC1Q96DZ1 483 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 PIWIL1Q96J94 861 aaKnown RBP14.75□□□□□ -0.05
UPF3A-204ENST00000475218 GABRG3Q99928 467 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 ACP6Q9NPH0 428 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 CNGB3Q9NQW8 809 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 CHMP5Q9NZZ3 219 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 SLC27A6Q9Y2P4 619 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 WASH3PC4AMC7 463 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 M0QYV0 167 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 MSI1O43347 362 aaKnown RBP14.75□□□□□ -0.05
UPF3A-204ENST00000475218 HOXB2P14652 356 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 SDHBP21912 280 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 GBP1P32455 592 aa14.75□□□□□ -0.05
UPF3A-204ENST00000475218 RPL34P49207 117 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms