RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ALOXE3Q9BYJ1 711 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 C11orf54Q9H0W9 315 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 FAM204AQ9H8W3 233 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 VSX1Q9NZR4 365 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CALCOCO1Q9P1Z2 691 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 HSFX1Q9UBD0 423 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 GJD2Q9UKL4 321 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SLC45A2Q9UMX9 530 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 PCDHA1Q9Y5I3 950 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 EPN1Q9Y6I3 576 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ZFHX3Q15911 3703 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ZNF804BA4D1E1 1349 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 ZNF521Q96K83 1311 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 A0A088AWK7 358 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 DNM1LO00429 736 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 MYL1P05976 194 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 FCER1AP12319 257 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 TYRP1P17643 537 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 PRDX5P30044 214 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 PHKA1P46020 1223 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 NEK3P51956 506 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 GPSM2P81274 684 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 SHC2P98077 582 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 SYCP2LQ5T4T6 812 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 THEMIS2Q5TEJ8 643 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 IL31Q6EBC2 164 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 APOA5Q6Q788 366 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 ERO1BQ86YB8 467 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 FAM90A1Q86YD7 464 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 TMEM132CQ8N3T6 1108 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 TMEM105Q8N8V8 129 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-210ENST00000471439 NEK9Q8TD19 979 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 ARNTL2Q8WYA1 636 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 RUBCNQ92622 972 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 MARS2Q96GW9 593 aaKnown RBP4.82□□□□□ -1.64
VPS13A-210ENST00000471439 RTKNQ9BST9 563 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 TLR10Q9BXR5 811 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 C22orf23Q9BZE7 217 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 GSTO2Q9H4Y5 243 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 CYP4F11Q9HBI6 524 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 MAN1C1Q9NR34 630 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 TERF2IPQ9NYB0 399 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 FEZ2Q9UHY8 353 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-210ENST00000471439 PACSIN3Q9UKS6 424 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 L1RE1Q9UN81 338 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 POLHQ9Y253 713 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 ASXL3Q9C0F0 2248 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 NAV3Q8IVL0 2385 aa4.82□□□□□ -1.64
VPS13A-210ENST00000471439 SALL3Q9BXA9 1300 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PIPSLA2A3N6 862 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 CAPN8A6NHC0 703 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 EIF4E1BA6NMX2 242 aaKnown RBP4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PMM2O15305 246 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 RPLP2P05387 115 aaKnown RBP4.81□□□□□ -1.64
VPS13A-210ENST00000471439 ADRA1BP35368 520 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 IL12RB1P42701 662 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 CCR10P46092 362 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 CLK3P49761 638 aaKnown RBP4.81□□□□□ -1.64
VPS13A-210ENST00000471439 CXADRP78310 365 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PPIL2Q13356 520 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 KIAA0753Q2KHM9 967 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 DACT2Q5SW24 774 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 SUSD4Q5VX71 490 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 MAEAQ7L5Y9 396 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 SRGAP1Q7Z6B7 1085 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 LCORLQ8N3X6 602 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PJA1Q8NG27 643 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 CYP2W1Q8TAV3 490 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 TBC1D16Q8TBP0 767 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 TBC1D15Q8TC07 691 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 LINC00476Q8WZB0 136 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 ZG16BQ96DA0 208 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 SLC39A13Q96H72 371 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 TEX13AQ9BXU3 409 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-210ENST00000471439 MRPL46Q9H2W6 279 aaKnown RBP4.81□□□□□ -1.64
VPS13A-210ENST00000471439 RNPEPQ9H4A4 650 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 SYNPO2LQ9H987 977 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 SLAMF7Q9NQ25 335 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PNPOQ9NVS9 261 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 PCDHA6Q9UN73 950 aa4.81□□□□□ -1.64
VPS13A-210ENST00000471439 FANCMQ8IYD8 2048 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 HEG1Q9ULI3 1381 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 UBN2Q6ZU65 1347 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 CLRN2A0PK11 232 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 CFAP69A5D8W1 941 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PRSS29PA6NIE9 313 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PPFIA4O75335 1185 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 MATN4O95460 622 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 GPANK1O95872 356 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 HRGP04196 525 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 CA3P07451 260 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 MYL3P08590 195 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 KITP10721 976 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 EGR2P11161 476 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PLA2G2AP14555 144 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 HDCP19113 662 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 CYP2B6P20813 491 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 PEX2P28328 305 aa4.8□□□□□ -1.64
VPS13A-210ENST00000471439 SMARCA1P28370 1054 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms