RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 OR52Z1P0C646 297 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 AVPR2P30518 371 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 GLUD2P49448 558 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 SCNN1GP51170 649 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 KRTAP10-2P60368 255 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 GUCY1B3Q02153 619 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 DSG1Q02413 1049 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 MAP4K2Q12851 820 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 GRIK3Q13003 919 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 FAM187BQ17R55 369 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 HAUS3Q68CZ6 603 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 CDCA2Q69YH5 1023 aaPredicted RBP7.98□□□□□ -1.13
USP54-208ENST00000461520 TMC5Q6UXY8 1006 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 CYP26C1Q6V0L0 522 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 USP53Q70EK8 1073 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 GPR149Q86SP6 731 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 CCDC83Q8IWF9 413 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 ZBTB8OSQ8IWT0 167 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 GPR65Q8IYL9 337 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 TDRD5Q8NAT2 981 aaKnown RBP7.98□□□□□ -1.13
USP54-208ENST00000461520 GSTCDQ8NEC7 633 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 CMASQ8NFW8 434 aaPredicted RBP7.98□□□□□ -1.13
USP54-208ENST00000461520 COLEC11Q9BWP8 271 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 APOL6Q9BWW8 343 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 JAM3Q9BX67 310 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 C2orf40Q9H1Z8 148 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 CDIP1Q9H305 208 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 FZD8Q9H461 694 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 NXF3Q9H4D5 531 aaKnown RBP7.98□□□□□ -1.13
USP54-208ENST00000461520 MIOSQ9NXC5 875 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 PCDHB4Q9Y5E5 795 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 MYO10Q9HD67 2058 aa7.98□□□□□ -1.13
USP54-208ENST00000461520 ARHGEF35A5YM69 484 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 H0Y858 1186 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 DDX3XO00571 662 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP54-208ENST00000461520 TEX28O15482 410 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 NPTXRO95502 500 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 PDGFBP01127 241 aaPredicted RBP7.97□□□□□ -1.13
USP54-208ENST00000461520 CYP11B2P19099 503 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 AKAP5P24588 427 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 NAMPTP43490 491 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 ZNF174Q15697 407 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 MAPK6Q16659 721 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 TTC38Q5R3I4 469 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 FUT10Q6P4F1 479 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 CCDC149Q6ZUS6 474 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 MAEAQ7L5Y9 396 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 OTOP3Q7RTS5 596 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 TAS1R1Q7RTX1 841 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 CDR2LQ86X02 465 aaPredicted RBP7.97□□□□□ -1.13
USP54-208ENST00000461520 NOSTRINQ8IVI9 506 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 FAM184AQ8NB25 1140 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 HDAC7Q8WUI4 952 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 RHOBTB2Q9BYZ6 727 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP54-208ENST00000461520 PPARGC1AQ9UBK2 798 aaKnown RBP7.97□□□□□ -1.13
USP54-208ENST00000461520 ADAM28Q9UKQ2 775 aa7.97□□□□□ -1.13
USP54-208ENST00000461520 NOL7Q9UMY1 257 aaKnown RBP7.97□□□□□ -1.13
USP54-208ENST00000461520 PTPRZ1P23471 2315 aaPredicted RBP7.97□□□□□ -1.13
USP54-208ENST00000461520 RIF1Q5UIP0 2472 aaKnown RBP7.96□□□□□ -1.13
USP54-208ENST00000461520 ACKR2O00590 384 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 TADA2AO75478 443 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 GLUD1P00367 558 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 U2AF2P26368 475 aaKnown RBP eCLIP7.96□□□□□ -1.14
USP54-208ENST00000461520 NFKB2Q00653 900 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 CREMQ03060 361 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 ADAM9Q13443 819 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 TUSC3Q13454 348 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 PRPF4BQ13523 1007 aaKnown RBP7.96□□□□□ -1.14
USP54-208ENST00000461520 PDIA5Q14554 519 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 HSP90AA2PQ14568 343 aaPredicted RBP7.96□□□□□ -1.14
USP54-208ENST00000461520 PPP2R5AQ15172 486 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 USP41Q3LFD5 358 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 EMC4Q5J8M3 183 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 PRR31Q5SQ13 230 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 C4orf32Q8N8J7 132 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 DEPTORQ8TB45 409 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 TOE1Q96GM8 510 aaKnown RBP7.96□□□□□ -1.14
USP54-208ENST00000461520 ADPGKQ9BRR6 497 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 RAB34Q9BZG1 259 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 EPB41L1Q9H4G0 881 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 PLEKHA4Q9H4M7 779 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 PDZD7Q9H5P4 517 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 MAN1C1Q9NR34 630 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 IGSF5Q9NSI5 407 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 FNIP2Q9P278 1114 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 LRWD1Q9UFC0 647 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 FAM186AA6NE01 2351 aa7.96□□□□□ -1.14
USP54-208ENST00000461520 CCDC195A0A1B0GUA6 201 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 F8W810 466 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 LAD1O00515 517 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 PRODHO43272 600 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 PRKCBP05771 671 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 THP07101 528 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 CCT6AP40227 531 aaKnown RBP7.95□□□□□ -1.14
USP54-208ENST00000461520 EFNA5P52803 228 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 IGSF22Q8N9C0 903 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 STAMQ92783 540 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 KIFAP3Q92845 792 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 IFT74Q96LB3 600 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms