RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 CCDC60Q8IWA6 550 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 METTL13Q8N6R0 699 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ZFAND2BQ8WV99 257 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 RIT2Q99578 217 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 DBNDD2Q9BQY9 259 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 NCOA5Q9HCD5 579 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PCDHGB6Q9Y5F9 930 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 XRN1Q8IZH2 1706 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SCN11AQ9UI33 1791 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ARHGEF33A8MVX0 844 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 LOC110117498-PIK3R3F6TDL0 507 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 AIREO43918 545 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ME2P23368 584 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FAM187BQ17R55 369 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PPP1R15BQ5SWA1 713 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PKN3Q6P5Z2 889 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SLC44A2Q8IWA5 706 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FLCNQ8NFG4 579 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PIK3R3Q92569 461 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TCEAL7Q9BRU2 100 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 NUAK2Q9H093 628 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SPINK5Q9NQ38 1064 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 AP1M2Q9Y6Q5 423 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 GAKO14976 1311 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FAM200BP0CF97 657 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CTPS1P17812 591 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ITIH1P19827 911 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FMO5P49326 533 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TFAMQ00059 246 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 MVKQ03426 396 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 LGALS3BPQ08380 585 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TCEA2Q15560 299 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PITRM1Q5JRX3 1037 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 RNF43Q68DV7 783 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 MYLK4Q86YV6 388 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SCAIQ8N9R8 606 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FAM84AQ96KN4 292 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SENP6Q9GZR1 1112 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 GPCPD1Q9NPB8 672 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SPAG4Q9NPE6 437 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 HPS4Q9NQG7 708 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ERGIC3Q9Y282 383 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 NDUFS3O75489 264 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ATG7O95352 703 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 EIF4A1P60842 406 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF846Q147U1 533 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 C11orf57Q6ZUT1 292 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 R3HCC1LQ7Z5L2 792 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CDK20Q8IZL9 346 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SPRTNQ9H040 489 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PIH1D3Q9NQM4 214 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 LSM7Q9UK45 103 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ROBO3Q96MS0 1386 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SOX30O94993 753 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 IDO1P14902 403 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PPP3CCP48454 512 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 COX10Q12887 443 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ZC2HC1CQ53FD0 456 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 GRHL2Q6ISB3 625 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 KIAA1841Q6NSI8 718 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CASP12Q6UXS9 341 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CCDC149Q6ZUS6 474 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FASTKD5Q7L8L6 764 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SMYD4Q8IYR2 804 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SPICE1Q8N0Z3 855 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 FKBP10Q96AY3 582 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ZSWIM1Q9BR11 485 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ADGRE3Q9BY15 652 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 OLA1Q9NTK5 396 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 COPZ2Q9P299 210 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 MAPK8IP1Q9UQF2 711 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CFL2Q9Y281 166 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TET1Q8NFU7 2136 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 LOC102724159A0A0B4J2E5 919 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 INO80B-WBP1J3KQ70 363 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SMNDC1O75940 238 aaKnown RBP eCLIP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 CCNE2O96020 404 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 APOC1P02654 83 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 APRTP07741 180 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ADARP55265 1226 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TPI1P60174 286 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PWP2Q15269 919 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ALG11Q2TAA5 492 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 LYPLAL1Q5VWZ2 237 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 JAMLQ86YT9 394 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TMEM132CQ8N3T6 1108 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PRMT1Q99873 361 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TNS3Q68CZ2 1445 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 WBP4O75554 376 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PMS1P54277 932 aaKnown RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 PAMR1Q6UXH9 720 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 ZNF75CPQ92670 426 aaPredicted RBP5.35□□□□□ -1.55
CSMD3-204ENST00000455883 GLMNQ92990 594 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 MIEF2Q96C03 454 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 WNK4Q96J92 1243 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 TCEANC2Q96MN5 208 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 SCGB3A2Q96PL1 93 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 IL22Q9GZX6 179 aa5.35□□□□□ -1.55
CSMD3-204ENST00000455883 VTA1Q9NP79 307 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms