RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TTLL3Q9Y4R7 772 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 USP3Q9Y6I4 520 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 PIAS1O75925 651 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 ATXN1P54253 815 aaKnown RBP15.61■□□□□ 0.09
LDLR-202ENST00000455727 SNCBQ16143 134 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 KCNT2Q6UVM3 1135 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 PIGZQ86VD9 579 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 LRRC6Q86X45 466 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 CCDC185Q8N715 623 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 ZNF398Q8TD17 642 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 NT5C3BQ969T7 300 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 GOLGA2P5Q9HBQ8 144 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 FZD10Q9ULW2 581 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 CHUKO15111 745 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 DGKIO75912 1065 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 CELF2O95319 508 aaKnown RBP15.61■□□□□ 0.09
LDLR-202ENST00000455727 MYL3P08590 195 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 DHRS4L1P0CG22 281 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 CCNB1P14635 433 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 ADRA1DP25100 572 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 TKTP29401 623 aaKnown RBP15.61■□□□□ 0.09
LDLR-202ENST00000455727 ALDH3A1P30838 453 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 ARL4AP40617 200 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 RIPK1Q13546 671 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 TTC39BQ5VTQ0 682 aaPredicted RBP15.61■□□□□ 0.09
LDLR-202ENST00000455727 NCBP2-AS2Q69YL0 99 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 BNIPLQ7Z465 357 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 ARRDC4Q8NCT1 418 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 OLFM3Q96PB7 478 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 DTLQ9NZJ0 730 aa15.61■□□□□ 0.09
LDLR-202ENST00000455727 GABRDO14764 452 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 DAB1O75553 588 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 METTL18O95568 372 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 NOS2P35228 1153 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 MNAT1P51948 309 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 NEK3P51956 506 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 FAAP100Q0VG06 881 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SEMA5AQ13591 1074 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SETDB1Q15047 1291 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SPDYAQ5MJ70 313 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SYCP2LQ5T4T6 812 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SWT1Q5T5J6 900 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 LGSNQ5TDP6 509 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 ASRGL1Q7L266 308 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 OSTM1Q86WC4 334 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 CHSY1Q86X52 802 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 HACE1Q8IYU2 909 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 DEFB106AQ8N104 65 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 LENG1Q96BZ8 264 aaPredicted RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 APOPT1Q96IL0 206 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 PPP1R10Q96QC0 940 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 XAB2Q9HCS7 855 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 LPXNO60711 386 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 DCTN3O75935 186 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 ATP5HO75947 161 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 MAP3K6O95382 1288 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 IGHA2P01877 340 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 NQO1P15559 274 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 NPR3P17342 541 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 PTPN1P18031 435 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 ETV4P43268 484 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 MRPS5P82675 430 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 CDK16Q00536 496 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 FAXCQ5TGI0 409 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 HEATR6Q6AI08 1181 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 TAF2Q6P1X5 1199 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 CYS1Q717R9 158 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 OTOAQ7RTW8 1153 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 PRPF39Q86UA1 669 aaKnown RBP15.6■□□□□ 0.09
LDLR-202ENST00000455727 ANKLE1Q8NAG6 615 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 CFAP36Q96G28 342 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SERAC1Q96JX3 654 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 SIGLEC10Q96LC7 697 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 PLAC1Q9HBJ0 212 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 ARHGEF3Q9NR81 526 aa15.6■□□□□ 0.09
LDLR-202ENST00000455727 TSC2P49815 1807 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 PTGESO14684 152 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 KRT37O76014 449 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 APOEP02649 317 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 AMPD1P23109 780 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 ADIGQ0VDE8 80 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 ZNF534Q76KX8 674 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 TBC1D1Q86TI0 1168 aaPredicted RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 TFB1MQ8WVM0 346 aaKnown RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 C10orf82Q8WW14 230 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 KLHL29Q96CT2 875 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 NPY6RQ99463 290 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 EBNA1BP2Q99848 306 aaKnown RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 MAGEB5Q9BZ81 275 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SLC17A7Q9P2U7 560 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SF3B1O75533 1304 aaKnown RBP eCLIP15.59■□□□□ 0.099e-6■■■■■ 68.9
LDLR-202ENST00000455727 GOLGA8RI6L899 631 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 CYB561D2O14569 222 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 UNC5CO95185 931 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SNRPAP09012 282 aaKnown RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 GOT1P17174 413 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 FDFT1P37268 417 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SULT1E1P49888 294 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SARNPP82979 210 aaKnown RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 BEX3Q00994 111 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms