RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 TM4SF4P48230 202 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 LIMS2Q7Z4I7 341 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 FAM35AQ86V20 835 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 CENPIQ92674 756 aaPredicted RBP12.22□□□□□ -0.45
VTA1-203ENST00000452973 SMOQ99835 787 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 TRIM56Q9BRZ2 755 aaKnown RBP12.22□□□□□ -0.45
VTA1-203ENST00000452973 C11orf84Q9BUA3 381 aaPredicted RBP12.22□□□□□ -0.45
VTA1-203ENST00000452973 PIH1D1Q9NWS0 290 aaKnown RBP12.22□□□□□ -0.45
VTA1-203ENST00000452973 PAK5Q9P286 719 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 LGALS13Q9UHV8 139 aa12.22□□□□□ -0.45
VTA1-203ENST00000452973 GOLGA6L7A0A1B0GV03 622 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 KBTBD13C9JR72 458 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 NDC80O14777 642 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 GEMIN4P57678 1058 aaKnown RBP12.21□□□□□ -0.45
VTA1-203ENST00000452973 THOC1Q96FV9 657 aaKnown RBP12.21□□□□□ -0.45
VTA1-203ENST00000452973 CHST12Q9NRB3 414 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 PIGVQ9NUD9 493 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 SAMD15Q9P1V8 674 aa12.21□□□□□ -0.45
VTA1-203ENST00000452973 MRPL42Q9Y6G3 142 aaKnown RBP12.21□□□□□ -0.45
VTA1-203ENST00000452973 TMEM88BA6NKF7 163 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 METTL18O95568 372 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 CA4P22748 312 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 BDNFP23560 247 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 LHX1P48742 406 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 AP1B1Q10567 949 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 SMAD1Q15797 465 aaKnown RBP12.21□□□□□ -0.46
VTA1-203ENST00000452973 BSPRYQ5W0U4 402 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 HEATR6Q6AI08 1181 aaKnown RBP12.21□□□□□ -0.46
VTA1-203ENST00000452973 FAM47EQ6ZV65 393 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 TRABD2AQ86V40 505 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 CTAGE3PQ8IX95 158 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 SMC6Q96SB8 1091 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 PAFAH2Q99487 392 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 KLC2Q9H0B6 622 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 DTLQ9NZJ0 730 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 MAD1L1Q9Y6D9 718 aa12.21□□□□□ -0.46
VTA1-203ENST00000452973 SRRM3A6NNA2 597 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 ITGB1P05556 798 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 KRT4P19013 534 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 NOS2P35228 1153 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 MSH2P43246 934 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ITGA7Q13683 1181 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 LPIN1Q14693 890 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 UPP1Q16831 310 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 CCDC121Q6ZUS5 278 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 STRADAQ7RTN6 431 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 TP53INP2Q8IXH6 220 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 TSPAN18Q96SJ8 248 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 C12orf65Q9H3J6 166 aaKnown RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 POPDC2Q9HBU9 364 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 PSMC3IPQ9P2W1 217 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 FZD10Q9ULW2 581 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 STAP1Q9ULZ2 295 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 GIT1Q9Y2X7 761 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 PDCD11Q14690 1871 aaKnown RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 SCN10AQ9Y5Y9 1956 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ATP2A2P16615 1042 aaKnown RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 GRIA1P42261 906 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 KCNJ11Q14654 390 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 NCBP2-AS2Q69YL0 99 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ARHGEF18Q6ZSZ5 1173 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 DENND5BQ6ZUT9 1274 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 CCDC197Q8NCU1 140 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ZMIZ2Q8NF64 920 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 TGS1Q96RS0 853 aaKnown RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 TMEM209Q96SK2 561 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 NCAPGQ9BPX3 1015 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 EURLQ9NYK6 297 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 IKBKGQ9Y6K9 419 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 FAM47DPA6NHR8 397 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 MFSD11O43934 449 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 MYCP01106 439 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 RPA3P35244 121 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 RPL34P49207 117 aaKnown RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 MGAT3Q09327 533 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 KBTBD12Q3ZCT8 623 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 SLC45A4Q5BKX6 768 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 OTUD1Q5VV17 481 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 CDKL3Q8IVW4 592 aaPredicted RBP12.2□□□□□ -0.46
VTA1-203ENST00000452973 VPS52Q8N1B4 723 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.2□□□□□ -0.46
VTA1-203ENST00000452973 RNF139Q8WU17 664 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 ARHGEF4Q9NR80 690 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 DDIT4Q9NX09 232 aa12.2□□□□□ -0.46
VTA1-203ENST00000452973 BCLAF3A2AJT9 711 aaKnown RBP12.19□□□□□ -0.46
VTA1-203ENST00000452973 WDR91A4D1P6 747 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 FAM72CH0Y354 149 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 DAB1O75553 588 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 FAM72AQ5TYM5 149 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 FAM72DQ6L9T8 149 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 FAM72BQ86X60 149 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 AGGF1Q8N302 714 aaeCLIP12.19□□□□□ -0.46
VTA1-203ENST00000452973 RIBC1Q8N443 379 aaPredicted RBP12.19□□□□□ -0.46
VTA1-203ENST00000452973 MYLPFQ96A32 169 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 TRPV6Q9H1D0 765 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 UPF3AQ9H1J1 476 aaKnown RBP12.19□□□□□ -0.46
VTA1-203ENST00000452973 CYLDQ9NQC7 956 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.19□□□□□ -0.462e-6■■■□□ 17.4
VTA1-203ENST00000452973 SNX10Q9Y5X0 201 aa12.19□□□□□ -0.46
VTA1-203ENST00000452973 TCRBV9S1A1TA0A576 114 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms