RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PRDM16Q9HAZ2 1276 aa13.98□□□□□ -0.17
HMGB3-204ENST00000448905 STRIP2Q9ULQ0 834 aa13.98□□□□□ -0.17
HMGB3-204ENST00000448905 SLC27A6Q9Y2P4 619 aa13.98□□□□□ -0.17
HMGB3-204ENST00000448905 FRYQ5TBA9 3013 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 HHLA1C9JL84 531 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 HYAL3O43820 417 aaPredicted RBP13.97□□□□□ -0.17
HMGB3-204ENST00000448905 STX10O60499 249 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 ACADMP11310 421 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 CD58P19256 250 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 NR2F2P24468 414 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 CD6P30203 668 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 GTF2H1P32780 548 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 GCLMP48507 274 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 ARID5AQ03989 594 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 ADAM9Q13443 819 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 KIAA1211LQ6NV74 962 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 TOGARAM2Q6ZUX3 1019 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 RSRC2Q7L4I2 434 aaKnown RBP13.97□□□□□ -0.17
HMGB3-204ENST00000448905 CADM4Q8NFZ8 388 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 NIF3L1Q9GZT8 377 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 NMUR1Q9HB89 426 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 ITM2CQ9NQX7 267 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 DNAAF2Q9NVR5 837 aaKnown RBP13.97□□□□□ -0.17
HMGB3-204ENST00000448905 OSER1Q9NX31 292 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 CACNA2D2Q9NY47 1150 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 PLK2Q9NYY3 685 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 HMGXB4Q9UGU5 601 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 FBXO10Q9UK96 956 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 NUDT5Q9UKK9 219 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 HCN2Q9UL51 889 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 NFE2L3Q9Y4A8 694 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 STON1Q9Y6Q2 735 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 USP24Q9UPU5 2620 aa13.97□□□□□ -0.17
HMGB3-204ENST00000448905 THADAQ6YHU6 1953 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 CNOT1A5YKK6 2376 aaKnown RBP13.96□□□□□ -0.17
HMGB3-204ENST00000448905 A0A1B0GVL5 298 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 WASH3PC4AMC7 463 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 ACTN4O43707 911 aaKnown RBP13.96□□□□□ -0.17
HMGB3-204ENST00000448905 CILPO75339 1184 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 STC2O76061 302 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 DNM1Q05193 864 aaKnown RBP13.96□□□□□ -0.17
HMGB3-204ENST00000448905 TRIP6Q15654 476 aaKnown RBP13.96□□□□□ -0.17
HMGB3-204ENST00000448905 NFIL3Q16649 462 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 KRT39Q6A163 491 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 Q6ZNB5 142 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 GPRIN1Q7Z2K8 1008 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 SLC41A1Q8IVJ1 513 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 FAM186BQ8IYM0 893 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 PRCCQ92733 491 aaPredicted RBP13.96□□□□□ -0.17
HMGB3-204ENST00000448905 NUP58Q9BVL2 599 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 SLC2A11Q9BYW1 496 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 TMEM8AQ9HCN3 771 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 FSCN3Q9NQT6 498 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 PLA2G4CQ9UP65 541 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 RAD54BQ9Y620 910 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 USP3Q9Y6I4 520 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 NUP205Q92621 2012 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 KIAA1549LQ6ZVL6 1849 aa13.96□□□□□ -0.17
HMGB3-204ENST00000448905 ANAPC1Q9H1A4 1944 aa13.96□□□□□ -0.18
HMGB3-204ENST00000448905 A0A1B0GTW7 788 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 MEI4A8MW99 385 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 PENKP01210 267 aaPredicted RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 PFKFB1P16118 471 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 SYKP43405 635 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 EFEMP1Q12805 493 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 EIF4HQ15056 248 aaKnown RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 ZNF394Q53GI3 561 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 PPP1R26Q5T8A7 1209 aaPredicted RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 SCD5Q86SK9 330 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 TMPRSS6Q8IU80 811 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 SPRYD3Q8NCJ5 442 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 TAS1R2Q8TE23 839 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 DDI1Q8WTU0 396 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 ZCCHC14Q8WYQ9 949 aaKnown RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 GATA6Q92908 595 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 ERLEC1Q96DZ1 483 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 SIPA1Q96FS4 1042 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 TOE1Q96GM8 510 aaKnown RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 TMEM176AQ96HP8 235 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 SPATA32Q96LK8 384 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 TWNKQ96RR1 684 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 MMRN2Q9H8L6 949 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 CD248Q9HCU0 757 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 ELOVL2Q9NXB9 296 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 THAP10Q9P2Z0 257 aaPredicted RBP13.95□□□□□ -0.18
HMGB3-204ENST00000448905 RASAL2Q9UJF2 1139 aa13.95□□□□□ -0.18
HMGB3-204ENST00000448905 FAM221BA6H8Z2 402 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 SRRM3A6NNA2 597 aaPredicted RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 MDM4O15151 490 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 SH3BP5O60239 455 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 RHOBTB3O94955 611 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 KLKB1P03952 638 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 HMBSP08397 361 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 NCAM1P13591 858 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 CD59P13987 128 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 CORO1AP31146 461 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 HARS2P49590 506 aaKnown RBP13.94□□□□□ -0.18
HMGB3-204ENST00000448905 FUT11Q495W5 492 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 C1orf220Q5T0J3 134 aa13.94□□□□□ -0.18
HMGB3-204ENST00000448905 IL27RAQ6UWB1 636 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms