RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TCERG1LQ5VWI1 586 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 LYSMD4Q5XG99 296 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 ARHGAP17Q68EM7 881 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 SLC23A3Q6PIS1 610 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 METTL3Q86U44 580 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 ZNF557Q8N988 423 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 RNF139Q8WU17 664 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 FOXJ1Q92949 421 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 TIGD1Q96MW7 591 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 CNTNAP3BQ96NU0 1288 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 CNTNAP3Q9BZ76 1288 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 MMRN2Q9H8L6 949 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 POLR3BQ9NW08 1133 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 SUSD2Q9UGT4 822 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 ARMCX3Q9UH62 379 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 SLC6A14Q9UN76 642 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 INVSQ9Y283 1065 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 SLC27A6Q9Y2P4 619 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 COQ4Q9Y3A0 265 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 PCNX2A6NKB5 2137 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 A0A1W2PQH9 124 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 C4orf47A7E2U8 309 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 SCAMP3O14828 347 aaKnown RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 CYP26A1O43174 497 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ADAM23O75077 832 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 STC2O76061 302 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 TBX18O95935 607 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ZBED1O96006 694 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 VDRP11473 427 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 OXTRP30559 389 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 HOXC13P31276 330 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 BCAT1P54687 386 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 RAD23BP54727 409 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 YWHAGP61981 247 aaKnown RBP eCLIP7.42□□□□□ -1.22
VPS41-208ENST00000448833 IRX4P78413 519 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 RPL6Q02878 288 aaKnown RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 ARID5AQ03989 594 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 GFPT1Q06210 699 aaPredicted RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 PDE4CQ08493 712 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ORC1Q13415 861 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 STILQ15468 1287 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 MAP7D1Q3KQU3 841 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ZNF394Q53GI3 561 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 SGO2Q562F6 1265 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 TRIM61Q5EBN2 209 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 RAB41Q5JT25 222 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 WDR45BQ5MNZ6 344 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 PPP1R15BQ5SWA1 713 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 N4BP2L1Q5TBK1 243 aaPredicted RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 PEAR1Q5VY43 1037 aaPredicted RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 PM20D1Q6GTS8 502 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 Q6ZNB5 142 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 TPGS1Q6ZTW0 290 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 C12orf40Q86WS4 652 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 MIB1Q86YT6 1006 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ELOA2Q8IYF1 753 aaPredicted RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 TMEFF1Q8IYR6 380 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 CPXM2Q8N436 756 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 HDDC3Q8N4P3 179 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 IPO4Q8TEX9 1081 aaKnown RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 GOLGA1Q92805 767 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 SMARCE1Q969G3 411 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 JAKMIP2Q96AA8 810 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 PLD4Q96BZ4 506 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 DHTKD1Q96HY7 919 aaPredicted RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 CEP63Q96MT8 703 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 IPO9Q96P70 1041 aaKnown RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 GABRG3Q99928 467 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ZDHHC5Q9C0B5 715 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 LRRC4Q9HBW1 653 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 APOBEC3GQ9HC16 384 aaKnown RBP7.42□□□□□ -1.22
VPS41-208ENST00000448833 MARCH2Q9P0N8 246 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 HMGXB4Q9UGU5 601 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 FBXO10Q9UK96 956 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 PILRBQ9UKJ0 227 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ZDHHC9Q9Y397 364 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 NFE2L3Q9Y4A8 694 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 SPTBN2O15020 2390 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 ADAMTS9Q9P2N4 1935 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 GON4LQ3T8J9 2241 aa7.42□□□□□ -1.22
VPS41-208ENST00000448833 NCOR2Q9Y618 2525 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 A0A1W2PQF6 199 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 BICDL2A1A5D9 508 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 UPK3BL1B0FP48 263 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 UPK3BL2E5RIL1 263 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 XPO1O14980 1071 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 PMM2O15305 246 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 P4HA2O15460 535 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SYNCRIPO60506 623 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 GREM1O60565 184 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 FGFR1OPO95684 399 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 LATS1O95835 1130 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PENKP01210 267 aaPredicted RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 SERPINF2P08697 491 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PAEPP09466 180 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 CISD3P0C7P0 127 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SETSIPP0DME0 302 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 GABRG2P18507 467 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 BCKDHBP21953 392 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms