RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CDK5RAP1Q96SZ6 601 aaKnown RBP21.76■■□□□ 1.07
SDC1-205ENST00000447124 SRRTQ9BXP5 876 aaKnown RBP21.76■■□□□ 1.07
SDC1-205ENST00000447124 POLMQ9NP87 494 aaPredicted RBP21.76■■□□□ 1.07
SDC1-205ENST00000447124 MARCH2Q9P0N8 246 aa21.76■■□□□ 1.07
SDC1-205ENST00000447124 AGO1Q9UL18 857 aaKnown RBP21.76■■□□□ 1.07
SDC1-205ENST00000447124 PCDHB4Q9Y5E5 795 aa21.76■■□□□ 1.07
SDC1-205ENST00000447124 CNOT1A5YKK6 2376 aaKnown RBP21.76■■□□□ 1.07
SDC1-205ENST00000447124 SLC12A8A0AV02 714 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 BICDL2A1A5D9 508 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 P4HA2O15460 535 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 PAEPP09466 180 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 GBP1P32455 592 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 MPLP40238 635 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 SLC8A3P57103 927 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 KCNH2Q12809 1159 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 PREPLQ4J6C6 727 aaPredicted RBP21.75■■□□□ 1.07
SDC1-205ENST00000447124 PPM1KQ8N3J5 372 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 SLC35F5Q8WV83 523 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 KCTD13Q8WZ19 329 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 MED15Q96RN5 788 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 LRRC4Q9HBW1 653 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 HESX1Q9UBX0 185 aa21.75■■□□□ 1.07
SDC1-205ENST00000447124 BCLAF3A2AJT9 711 aaKnown RBP21.74■■□□□ 1.07
SDC1-205ENST00000447124 YJEFN3A6XGL0 299 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 E7ENQ6 273 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 ALDH1A2O94788 518 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 CORO1AP31146 461 aaKnown RBP21.74■■□□□ 1.07
SDC1-205ENST00000447124 P2RY2P41231 377 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 MARSP56192 900 aaKnown RBP21.74■■□□□ 1.07
SDC1-205ENST00000447124 ADIGQ0VDE8 80 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 PAK1Q13153 545 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 ELF2Q15723 593 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 CNGA2Q16280 664 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 MAP7D1Q3KQU3 841 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 FYB2Q5VWT5 728 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 BSPRYQ5W0U4 402 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 PMS2CLQ68D20 193 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 PMF1Q6P1K2 205 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 RSRC2Q7L4I2 434 aaKnown RBP21.74■■□□□ 1.07
SDC1-205ENST00000447124 KREMEN1Q96MU8 473 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 CD248Q9HCU0 757 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 SFMBT1Q9UHJ3 866 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 MBD1Q9UIS9 605 aaPredicted RBP21.74■■□□□ 1.07
SDC1-205ENST00000447124 ZNF510Q9Y2H8 683 aa21.74■■□□□ 1.07
SDC1-205ENST00000447124 A0A1W2PQF6 199 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 TCRBV21S2A2A0A5A6 115 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 FOXD2O60548 495 aaPredicted RBP21.73■■□□□ 1.07
SDC1-205ENST00000447124 PENKP01210 267 aaPredicted RBP21.73■■□□□ 1.07
SDC1-205ENST00000447124 NTSR1P30989 418 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 DGKGP49619 791 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 RGS7P49802 495 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 CREB5Q02930 508 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 CAMK4Q16566 473 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 TCEAL6Q6IPX3 200 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 NUDT18Q6ZVK8 323 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 DENND1CQ8IV53 801 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 HMGB4Q8WW32 186 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 EDEM1Q92611 657 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 TCEAL3Q969E4 200 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 DCLK3Q9C098 648 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 VPS45Q9NRW7 570 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 KIAA1468Q9P260 1216 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 CLEC4EQ9ULY5 219 aa21.73■■□□□ 1.07
SDC1-205ENST00000447124 THADAQ6YHU6 1953 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 GNA14O95837 355 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 LCP1P13796 627 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 BRD2P25440 801 aaKnown RBP21.72■■□□□ 1.07
SDC1-205ENST00000447124 CETN1Q12798 172 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 TRIP4Q15650 581 aaPredicted RBP21.72■■□□□ 1.07
SDC1-205ENST00000447124 AASDHQ4L235 1098 aaPredicted RBP21.72■■□□□ 1.07
SDC1-205ENST00000447124 KIAA1211LQ6NV74 962 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 SCML4Q8N228 414 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 STRIP2Q9ULQ0 834 aa21.72■■□□□ 1.07
SDC1-205ENST00000447124 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.72■■□□□ 1.07
SDC1-205ENST00000447124 WASH3PC4AMC7 463 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 PIK3R2O00459 728 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 TM4SF5O14894 197 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 CAVIN2O95810 425 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 AFPP02771 609 aaKnown RBP21.71■■□□□ 1.07
SDC1-205ENST00000447124 SETSIPP0DME0 302 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 HOXB2P14652 356 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 GABRG2P18507 467 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 CHKAP35790 457 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 ZNF132P52740 706 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 DAOAP59103 153 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 UBE2HP62256 183 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 TRMT11Q7Z4G4 463 aaKnown RBP21.71■■□□□ 1.07
SDC1-205ENST00000447124 C11orf74Q86VG3 221 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 FMNL3Q8IVF7 1028 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 PGBD3Q8N328 593 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 C12orf50Q8NA57 414 aaPredicted RBP21.71■■□□□ 1.07
SDC1-205ENST00000447124 RBBP8NLQ8NC74 664 aaPredicted RBP21.71■■□□□ 1.07
SDC1-205ENST00000447124 ERLEC1Q96DZ1 483 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 IPO9Q96P70 1041 aaKnown RBP21.71■■□□□ 1.07
SDC1-205ENST00000447124 CNGB3Q9NQW8 809 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 BCCIPQ9P287 314 aaKnown RBP eCLIP21.71■■□□□ 1.07
SDC1-205ENST00000447124 CNTN6Q9UQ52 1028 aa21.71■■□□□ 1.07
SDC1-205ENST00000447124 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.71■■□□□ 1.07
SDC1-205ENST00000447124 LIMK1P53667 647 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 MFAP3P55082 362 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms