RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TRMT5Q32P41 509 aaKnown RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 GALNT4Q8N4A0 578 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 PLD5Q8N7P1 536 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SH3TC2Q8TF17 1288 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 RNPEPQ9H4A4 650 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 AP4E1Q9UPM8 1137 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 PLLPQ9Y342 182 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 NFASCO94856 1347 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 BTAF1O14981 1849 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ERVK-10P10266 1014 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SLC12A2P55011 1212 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 EFHC1Q5JVL4 640 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 VWA5B1Q5TIE3 1220 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 METTL7BQ6UX53 244 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 C1orf127Q8N9H9 656 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ICA1LQ8NDH6 482 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 KLK14Q9P0G3 267 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 CYTH4Q9UIA0 394 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SOX13Q9UN79 622 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 MAFO75444 373 aaPredicted RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 KLHL2O95198 593 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 CSH1P0DML2 217 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 CSH2P0DML3 217 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ATP6V1B1P15313 513 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 GLRBP48167 497 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ATXN1P54253 815 aaKnown RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 SLC25A11Q02978 314 aaKnown RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 EXOC8Q8IYI6 725 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 USP33Q8TEY7 942 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ZNF333Q96JL9 665 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 VCX3AQ9NNX9 186 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 PNPOQ9NVS9 261 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 THAP1Q9NVV9 213 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 UBP1Q9NZI7 540 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 BFARQ9NZS9 450 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SLC4A7Q9Y6M7 1214 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 TPP1O14773 563 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 CHADO15335 359 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ETS2P15036 469 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 MSX2P35548 267 aaPredicted RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 ASPAP45381 313 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SULT1E1P49888 294 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 BTKQ06187 659 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 PDK2Q15119 407 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 CA9Q16790 459 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 MAP3K21Q5TCX8 1036 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SPATA24Q86W54 205 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 RNF135Q8IUD6 432 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 TNS4Q8IZW8 715 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SIX6OS1Q8N1H7 587 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 MPP5Q8N3R9 675 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 COLGALT1Q8NBJ5 622 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SGF29Q96ES7 293 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 LGMNQ99538 433 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ELP3Q9H9T3 547 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 LRRC42Q9Y546 428 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 MAFBQ9Y5Q3 323 aaPredicted RBP12.26□□□□□ -0.45
MSH6-204ENST00000445503 SPDYE16A6NNV3 312 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 FARP2O94887 1054 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 LINGO3P0C6S8 592 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 RALBP11234 206 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 MAP7Q14244 749 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 FSCBQ5H9T9 825 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 LPCAT4Q643R3 524 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 DLK2Q6UY11 383 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 SLC4A11Q8NBS3 891 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 CHST13Q8NET6 341 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 TFB1MQ8WVM0 346 aaKnown RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 SMARCAD1Q9H4L7 1026 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PRMT7Q9NVM4 692 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 CPSF3Q9UKF6 684 aaKnown RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 BARX2Q9UMQ3 279 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 FARP1Q9Y4F1 1045 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 SDR42E2A6NKP2 422 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 ARL1P40616 181 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 NUDT2P50583 147 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PRKD1Q15139 912 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 PPM1JQ5JR12 505 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 IL31Q6EBC2 164 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 RNF169Q8NCN4 708 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 LPIN3Q9BQK8 851 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PIDD1Q9HB75 910 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 ADA2Q9NZK5 511 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 BTBD7Q9P203 1132 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 ZNF212Q9UDV6 495 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 GPR25O00155 361 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 TUBP50607 506 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 NEK3P51956 506 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 COG7P83436 770 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PDPK2PQ6A1A2 396 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 CATSPERGQ6ZRH7 1159 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PAF1Q8N7H5 531 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 CNKSR2Q8WXI2 1034 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 PPWD1Q96BP3 646 aaKnown RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 TMA16Q96EY4 203 aaKnown RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 PIWIL1Q96J94 861 aaKnown RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 GMLQ99445 158 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 GCOM2Q9BZD3 368 aaPredicted RBP12.25□□□□□ -0.45
MSH6-204ENST00000445503 PCDH18Q9HCL0 1135 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms