RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FAM204AQ9H8W3 233 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 OSGEPQ9NPF4 335 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 PRDM6Q9NQX0 595 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 TDP1Q9NUW8 608 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 IP6K2Q9UHH9 426 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 USTQ9Y2C2 406 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 HBS1LQ9Y450 684 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.46■□□□□ 0.23
USP40-206ENST00000443711 HELZP42694 1942 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 SLC12A8A0AV02 714 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 M0QYT0 321 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 ZSCAN12O43309 604 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 KRT86O43790 486 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 LAMP2P13473 410 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 PSMA2P25787 234 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 ARHGAP25P42331 645 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 PITX1P78337 314 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 ATP11AP98196 1134 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 OGDHQ02218 1023 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 DEUP1Q05D60 604 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 NNTQ13423 1086 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 PIGHQ14442 188 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 ACAP1Q15027 740 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 HS1BP3Q53T59 392 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 ZNF662Q6ZS27 426 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 SND1Q7KZF4 910 aaKnown RBP eCLIP16.45■□□□□ 0.22
USP40-206ENST00000443711 ARID3BQ8IVW6 561 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 ADAM32Q8TC27 787 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 CENPIQ92674 756 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 SMARCD2Q92925 531 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 TRIM44Q96DX7 344 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 PGAP3Q96FM1 320 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 PHF7Q9BWX1 381 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 KLF16Q9BXK1 252 aaPredicted RBP16.45■□□□□ 0.22
USP40-206ENST00000443711 TRIM7Q9C029 511 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 DDIT4Q9NX09 232 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 THEGQ9P2T0 379 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 ARHGAP26Q9UNA1 814 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 CPQQ9Y646 472 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 DUSP10Q9Y6W6 482 aa16.45■□□□□ 0.22
USP40-206ENST00000443711 SYNJ2BP-COX16A0A087WUM0 186 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 IRAK2O43187 625 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 CCP110O43303 1012 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 RNF8O76064 485 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 ENDOD1O94919 500 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 IGLV3-25P01717 112 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 TFE3P19532 575 aaPredicted RBP16.44■□□□□ 0.22
USP40-206ENST00000443711 NAP1L1P55209 391 aaKnown RBP16.44■□□□□ 0.22
USP40-206ENST00000443711 TBX4P57082 545 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 TFF2Q03403 129 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 NME3Q13232 169 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 TRIP4Q15650 581 aaPredicted RBP16.44■□□□□ 0.22
USP40-206ENST00000443711 IFI16Q16666 785 aaKnown RBP16.44■□□□□ 0.22
USP40-206ENST00000443711 C15orf59Q2T9L4 293 aaPredicted RBP16.44■□□□□ 0.22
USP40-206ENST00000443711 FAM78AQ5JUQ0 283 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 POTEHQ6S545 545 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 STRADAQ7RTN6 431 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 DDX42Q86XP3 938 aaKnown RBP eCLIP16.44■□□□□ 0.22
USP40-206ENST00000443711 ASB16Q96NS5 453 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 NCAPGQ9BPX3 1015 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 KIF9Q9HAQ2 790 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 TRPV4Q9HBA0 871 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 GKN1Q9NS71 199 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 SMPD4Q9NXE4 827 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 COX16Q9P0S2 106 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 PYCARDQ9ULZ3 195 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 TLR6Q9Y2C9 796 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 NR2E1Q9Y466 385 aa16.44■□□□□ 0.22
USP40-206ENST00000443711 A0A0U1RQJ8 604 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 MSI1O43347 362 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 PROSCO94903 275 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 RDXP35241 583 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 RING1Q06587 406 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 ZNF252P-AS1Q0IIN9 211 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 MESDQ14696 234 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 CDO1Q16878 200 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 ARHGAP29Q52LW3 1261 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 OTUD1Q5VV17 481 aaPredicted RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 BNIPLQ7Z465 357 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 PLCD3Q8N3E9 789 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 RNF10Q8N5U6 811 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 CELF5Q8N6W0 485 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 NIPA2Q8N8Q9 360 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 TDRD5Q8NAT2 981 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 FAM172AQ8WUF8 416 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 ATRIPQ8WXE1 791 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 USP13Q92995 863 aaPredicted RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 RNF34Q969K3 372 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 E2F7Q96AV8 911 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 PLD4Q96BZ4 506 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 BTBD6Q96KE9 485 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 ZFRQ96KR1 1074 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 SMG9Q9H0W8 520 aaKnown RBP16.43■□□□□ 0.22
USP40-206ENST00000443711 LZTFL1Q9NQ48 299 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.43■□□□□ 0.22
USP40-206ENST00000443711 EPS15L1Q9UBC2 864 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 SALL4Q9UJQ4 1053 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 GUCA1BQ9UMX6 200 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 PAXBP1Q9Y5B6 917 aa16.43■□□□□ 0.22
USP40-206ENST00000443711 MACROD2A1Z1Q3 448 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms