RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 ARHGEF18Q6ZSZ5 1173 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TAOK1Q7L7X3 1001 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 ZNF280BQ86YH2 543 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CLEC4CQ8WTT0 213 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CDK5RAP1Q96SZ6 601 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 PAAF1Q9BRP4 392 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TMEM109Q9BVC6 243 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 C11orf49Q9H6J7 331 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TMBIM4Q9HC24 238 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 STK39Q9UEW8 545 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 HEY1Q9Y5J3 304 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 A0A087WUV0 522 aaPredicted RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 E7EVH7 732 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 RASGRF2O14827 1237 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 ABHD2P08910 425 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CLTBP09497 229 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 ADRA1BP35368 520 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 FDFT1P37268 417 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CCL23P55773 120 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 YWHAGP61981 247 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS50-205ENST00000441602 SCAPQ12770 1279 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TRIM60Q495X7 471 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 SLC45A4Q5BKX6 768 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 ZC3H12AQ5D1E8 599 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 BSPRYQ5W0U4 402 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 PM20D1Q6GTS8 502 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 NUP93Q8N1F7 819 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 RIBC1Q8N443 379 aaPredicted RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 PLD5Q8N7P1 536 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 SERPINB11Q96P15 392 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CASD1Q96PB1 797 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 KCTD15Q96SI1 283 aaPredicted RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 FAM118BQ9BPY3 351 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 RTP3Q9BQQ7 232 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TMEM121Q9BTD3 319 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TTPALQ9BTX7 342 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 C11orf84Q9BUA3 381 aaPredicted RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 OSBPL7Q9BZF2 842 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 WDCPQ9H6R7 721 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 CNOT10Q9H9A5 744 aaKnown RBP6.25□□□□□ -1.41
VPS50-205ENST00000441602 SAYSD1Q9NPB0 183 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 WBP1LQ9NX94 342 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 NEU2Q9Y3R4 380 aa6.25□□□□□ -1.41
VPS50-205ENST00000441602 TLDC2A0PJX2 215 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 KCNN4O15554 427 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 SPAG6O75602 509 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 GABBR2O75899 941 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 SYF2O95926 243 aaKnown RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 APOEP02649 317 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 SLC11A1P49279 550 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ARPP19P56211 112 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 BASP1P80723 227 aaKnown RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 HTRA3P83110 453 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 NR1H3Q13133 447 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 MMRN1Q13201 1228 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 HIF1AQ16665 826 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 SH3PXD2AQ5TCZ1 1133 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 KIAA0319Q5VV43 1072 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 RHBDF2Q6PJF5 856 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CD300LGQ6UXG3 332 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ZNF771Q7L3S4 317 aaPredicted RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 DEFB128Q7Z7B8 93 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ZC3H18Q86VM9 953 aaKnown RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 MON1AQ86VX9 555 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 RELL1Q8IUW5 271 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 VPS52Q8N1B4 723 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ATP11CQ8NB49 1132 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ZMIZ2Q8NF64 920 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 OR10T2Q8NGX3 314 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 TFB1MQ8WVM0 346 aaKnown RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 NT5C3BQ969T7 300 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 ZNF558Q96NG5 402 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CSPG4P5Q96PW8 444 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 RBM15Q96T37 977 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS50-205ENST00000441602 CRISPLD2Q9H0B8 497 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 AAASQ9NRG9 546 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 YJEFN3A6XGL0 299 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 E7ENQ6 273 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CHADO15335 359 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 RIPK2O43353 540 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CREB3O43889 395 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 NEBLO76041 1014 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 TTC4O95801 387 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 AGTP01019 485 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CD48P09326 243 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 LAG3P18627 525 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 FGFR3P22607 806 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 YWHAQP27348 245 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 RPL22P35268 128 aaKnown RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 MAGEA4P43358 317 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CTCFP49711 727 aaPredicted RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 NDUFV1P49821 464 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 KPNA1P52294 538 aaPredicted RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 SLC5A3P53794 718 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 CREMQ03060 361 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 IFRD2Q12894 506 aaPredicted RBP6.24□□□□□ -1.41
VPS50-205ENST00000441602 TAF12Q16514 161 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 USP41Q3LFD5 358 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 TMEM199Q8N511 208 aa6.24□□□□□ -1.41
VPS50-205ENST00000441602 FAM71DQ8N9W8 422 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms